Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332G12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0168 - 15379897-15380819,15381306-15381894                       29   1.7  
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714...    29   3.0  
11_02_0032 + 7564153-7564719,7564844-7565128,7565207-7565524,756...    28   5.2  
05_01_0329 - 2580083-2580115,2580787-2580864,2580986-2581078,258...    28   5.2  
03_02_0390 + 8056006-8057502                                           27   9.1  
02_01_0243 - 1601977-1602834,1602857-1603063                           27   9.1  

>10_08_0168 - 15379897-15380819,15381306-15381894
          Length = 503

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 385 QLIVARILAGSAAAKQALVSVGDVLLEVDGV-HIESEEQLKEAVAK 519
           +L+V    AG A   +  V  G+V   ++GV H E  E L+E V K
Sbjct: 421 RLVVREWRAGVAVGDRGAVDAGEVRARIEGVMHGEEGEVLREQVGK 466


>02_05_0359 -
           28269236-28269541,28270857-28270919,28271439-28271459,
           28271660-28271716,28271789-28271874,28271982-28272039,
           28272176-28272311,28272799-28273073,28273564-28273602,
           28274052-28274143,28274422-28274454,28275041-28275088,
           28275191-28275323
          Length = 448

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 183 QIGKIWLERGSGIDDKLIPNEFPDLIEFSKESPEGNGDM 299
           ++ +IW+ERG G   KL+ ++   L  +S+ +     D+
Sbjct: 355 KLSQIWIERGLGFPSKLVMDDSMPLHAWSRSAVASESDL 393


>11_02_0032 +
           7564153-7564719,7564844-7565128,7565207-7565524,
           7565612-7565839,7566662-7566762,7566852-7566933,
           7567230-7567364,7567460-7567516,7568030-7568167
          Length = 636

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 57  GNVNIIRSLSEYRGNNIRTIEQAELAIIVSRAHFKALIEAHDQIGKIWLERG-SGI 221
           GN  ++   S+  G N   I +     ++S  H K L  AH ++ KIW+  G SGI
Sbjct: 80  GNTEVVAIQSKENGRNSNNILEDGEKSVLSSDHSKKL-SAHHRL-KIWITSGHSGI 133


>05_01_0329 -
           2580083-2580115,2580787-2580864,2580986-2581078,
           2581209-2581326,2583350-2583440,2585167-2585207,
           2585854-2585981,2586078-2586353,2587318-2587472,
           2587557-2587700,2587991-2588567
          Length = 577

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 388 LIVARILAGSAAAKQALVSVGDVLLEVDGVHIESEEQLK 504
           LIV  +  GS A K   V VGDV+   +G HI S  +L+
Sbjct: 506 LIVKEVSEGSIAEKLG-VRVGDVIKFFNGKHISSTVELE 543


>03_02_0390 + 8056006-8057502
          Length = 498

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = -2

Query: 217 PDPLSNQILPIWS*ASINALKCALDTMIASSACSIVRILFPRYSLSDLIMFTLPSDTGFT 38
           P PLS+ ILP +  +  +A   ALD    S+A +         + S     +LPS +  T
Sbjct: 9   PSPLSSDILPHFPPSLADAGAGALDLSFTSTASASTSSFTTATTFSARSSLSLPSFSSST 68

Query: 37  SRS 29
           S S
Sbjct: 69  SLS 71


>02_01_0243 - 1601977-1602834,1602857-1603063
          Length = 354

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 390 YCCKDTCRKCSSKTGLSICW*CSTGSR 470
           YCC  TC   S+    + C  CS+G+R
Sbjct: 81  YCCGATCASASAAPATASC--CSSGTR 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,911,631
Number of Sequences: 37544
Number of extensions: 289175
Number of successful extensions: 689
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)