Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332G09f
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0067 + 31430669-31430852,31430954-31431099,31431227-314316...    29   2.2  
05_03_0085 - 8271718-8272005,8272110-8272393,8273610-8274012,827...    28   3.8  
04_03_0119 + 11485753-11486202                                         28   3.8  
03_06_0653 - 35305279-35306163                                         28   3.8  
11_06_0617 - 25552308-25552978,25553384-25553454,25553691-255537...    27   6.7  
08_01_0758 - 7193287-7193871,7193965-7194421,7194437-7194655,719...    27   8.8  

>03_06_0067 +
           31430669-31430852,31430954-31431099,31431227-31431614,
           31431707-31431783,31431922-31432146
          Length = 339

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 424 NYVHKIELHNQKRISNAAYKYNAVLLGXLW 513
           +++ K  LHN+K    A+  ++ VL+G LW
Sbjct: 262 SHLQKYRLHNRKSPGTASASHSIVLVGDLW 291


>05_03_0085 -
           8271718-8272005,8272110-8272393,8273610-8274012,
           8274792-8274816,8275686-8276149
          Length = 487

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 167 FVGYLIIFAGAAAGYIMQTPSHKRIDIFYSLVGVALFVASGAIIIDRFXHYGK 325
           F+GY+I FAG  +G  +   ++       SL G+++       +I  F H  K
Sbjct: 351 FLGYIIGFAGVVSGIALYNRTYSNFTTHRSL-GISVLALGSLQVIAFFLHPNK 402


>04_03_0119 + 11485753-11486202
          Length = 149

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 153 SSPVPLSGTSSYSLVRPRAT*CRLLHTNGSTSSIRWSVLPCSSLA 287
           +SP P S TS+ + + P  + CR        S + W  + C  +A
Sbjct: 79  ASPPPSSATSTCTALSPGTSCCRRCRRVSPLSCMLWPEIDCDDIA 123


>03_06_0653 - 35305279-35306163
          Length = 294

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 208 ARGRTSEYDEVPDKGTGDEHANIRICIVTVVMESDARTRKCQLQKL 71
           A   +SE +   D   GDE A  R C      E+  R  +CQ +K+
Sbjct: 175 AASSSSEEEAACDDDDGDECAARRWCCAREYFEAKERWEECQFKKM 220


>11_06_0617 -
           25552308-25552978,25553384-25553454,25553691-25553727,
           25553807-25553927,25554309-25554428,25554834-25555130,
           25555286-25555288
          Length = 439

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 102 ASLSITTVTMQMRILACSSPVPLSGTSSYS-LVRPRAT*CRLLHTNGSTSSIRWSVLPCS 278
           +++ ++ +   +  LA SS    S    YS LV P+   C  LH   + SSI +S+   S
Sbjct: 377 SAICLSNLNFSIADLAPSSAWTCSNVHGYSELVFPKP--CSELHDTSTNSSICFSLSSYS 434

Query: 279 SLAV 290
           +LAV
Sbjct: 435 ALAV 438


>08_01_0758 -
           7193287-7193871,7193965-7194421,7194437-7194655,
           7194881-7195419
          Length = 599

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -3

Query: 511 IVILIRQHCICMQHLK 464
           IV+LI++ C C+QH+K
Sbjct: 483 IVVLIKRGCHCLQHIK 498


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,936,722
Number of Sequences: 37544
Number of extensions: 267557
Number of successful extensions: 661
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)