Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332G02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 31 0.10
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 29 0.42
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces... 26 3.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 3.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 6.8
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 25 6.8
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p... 25 6.8
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 25 9.0
SPBC215.04 |git11||heterotrimeric G protein gamma subunit Git11 ... 25 9.0
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 9.0
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 31.1 bits (67), Expect = 0.10
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Frame = +2
Query: 44 MQLAFYRLHNTPGAHY-ESAATRMYAGGRTETIRSCSIESIEFAKAMLNPQIAPKEKLTK 220
+Q YR+ + A+Y ES T +Y R R C + + +AP + +
Sbjct: 121 IQRNMYRMDASGPANYGESKPTLLYTNQRDHLDRLCDQVKFYLDQCNVEYFVAPYLAMAQ 180
Query: 221 LQNAINGHKDYTVQALQGFGVDRHLLGL-KLIALENGIELPKLYTDP 358
L +NG + A+ G D L G+ K I N K+ +DP
Sbjct: 181 LAYFLNGTSSPYIDAIYG-STDLLLFGVKKFITSMNTSSNVKISSDP 226
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 29.1 bits (62), Expect = 0.42
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +2
Query: 125 RTETIRSCSIESIEFAKAMLNPQIAPKEKLTKLQNAINGHKDYTVQALQGFG---VDRHL 295
+ +R ++ EF + N I PKEK+ + N++ H LQ FG V H
Sbjct: 319 KNSNLRLGDLKGNEFHIVVRNV-ITPKEKVVEALNSLKEHGFINYFGLQRFGTSSVGTHT 377
Query: 296 LGLKLI 313
+G++L+
Sbjct: 378 IGVRLL 383
>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 265
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 183 LIHKLHRKRN*LNYKTLSTDIKITLCRLFKD 275
L+HK + N LNY+TL + +C LF D
Sbjct: 126 LVHKWEQYTNNLNYRTLKFRLG-KMCLLFND 155
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = +2
Query: 2 KSQKLSPDSYLQMAMQLAFYRLHNTPGAHYESAATRMYAGGRTETIRSCSIESIEFAKAM 181
+ +++ P+ ++A++ ++ G H GR T+R +S E AK+
Sbjct: 414 EEEQIDPEEAKRIALRERMAKMSGGIGMHVFGLPGLAAPIGRKNTLRRTPAKSSEEAKST 473
Query: 182 LNPQIAPKE 208
N PK+
Sbjct: 474 TNDSSPPKD 482
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 221 LQNAINGHKDYTVQALQGFGVDRHLLGLKLIALENGIELPKLYTDPGYTR 370
L + N + D ++AL GL+ IA +G +PKL +D R
Sbjct: 418 LHASSNTNADNIIRALGDVAGSARAAGLREIAAASGSPMPKLPSDSALHR 467
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -2
Query: 469 IASGVAVRHEGPVTHEPIALARHLAC*NSHMRTSSITW--VCI 347
IASG++V EGP H + +++ + R SI + +C+
Sbjct: 242 IASGLSVGKEGPSVHLATTIGHNISKIFKYAREGSIRYRDICV 284
>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 509
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 322 KWYRTTQAVYRPRLY*KCAYENFNKP 399
KW RT++ +YR R+ K AY +P
Sbjct: 75 KWARTSRNLYRSRIPWKRAYLYVKRP 100
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 499 CEVDVVVSWVIASGVAVRHEGPVTH 425
C + V + +ASG+ V EGP H
Sbjct: 161 CSKSLAVCFSVASGLWVGKEGPFVH 185
>SPBC215.04 |git11||heterotrimeric G protein gamma subunit Git11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 72
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 174 FANSIDSIEQDLMVSVRPP 118
FAN ++I + +MVSV PP
Sbjct: 20 FANYANNIPEPMMVSVAPP 38
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 319 KCDKLQTK*MSVHTKSLKSLHSVIFMSVDSVL 224
KC +K + +H + +KSLHS+ + +D +
Sbjct: 344 KCIMSGSKIIELHMEKVKSLHSLSIICLDMAI 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,105
Number of Sequences: 5004
Number of extensions: 43437
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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