Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332G02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   0.82 
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   1.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   3.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   5.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.7  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +2

Query: 254 TVQALQGFGVDRHLLGLKLIALEN 325
           T QAL        LLGLKLI  EN
Sbjct: 263 TEQALDASNAPEGLLGLKLINAEN 286


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +3

Query: 30  ICKWRCNWLSTDYTTRPARTTSQQQQG 110
           +  W+  WLS +++    R  +Q+++G
Sbjct: 66  VLSWQSKWLSINHSACAIRCLAQRRKG 92


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +2

Query: 311 IALENGIELPKLYTDPGYTRSAHMRISTSQVAC 409
           + ++  IELP+L     YT       ST    C
Sbjct: 201 LVVDENIELPQLQLVKNYTADCTQVYSTGNFTC 233


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +2

Query: 329 IELPKLYTDPGYTRSAHMRISTSQVAC 409
           IELP+L     YT    +  ST    C
Sbjct: 176 IELPQLDISNNYTTDCTIEYSTGNFTC 202


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 408 HATWLVEILICALLV*PGSVYSLGS 334
           + TW++  L C +    GS++  GS
Sbjct: 115 YETWVLGPLFCQIYAMLGSLFGCGS 139


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 408 HATWLVEILICALLV*PGSVYSLGS 334
           + TW++  L C +    GS++  GS
Sbjct: 81  YETWVLGPLFCQIYAMLGSLFGCGS 105


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 338 PKLYTDPGYTRSAHMRISTSQVACKCDGF 424
           P+   +P  T  A  + S ++V CK DGF
Sbjct: 679 PRWILEP--TDKAFAQGSDARVECKADGF 705


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 334 TTQAVYRPRLY*KCAYE 384
           +T A+YR +LY  C Y+
Sbjct: 33  STSALYRLKLYLFCDYD 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,981
Number of Sequences: 438
Number of extensions: 2838
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)