Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332G01f
         (301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   3.1  
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    23   7.3  
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    23   9.6  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    23   9.6  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    23   9.6  

>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 209  RGDAGSRPHHSDITTCPTEMPSTTSY 286
            R +AG RP    I T   E P+ T+Y
Sbjct: 972  RTEAGIRPFVKQIDTVAAEFPAFTNY 997


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 273 LGISVGHVVMSE 238
           LG++VGHV MSE
Sbjct: 164 LGVAVGHVEMSE 175


>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 203 SPRGDAGSRPHHSDITTCPT 262
           SP G A SRP  S  TT P+
Sbjct: 258 SPVGTAQSRPTASSSTTAPS 277


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 206 PRGDAGSRPHHSDITTCPTEMPSTTSYSA 292
           P+GD+   P H +    P    S  SYSA
Sbjct: 6   PKGDSKEPPKHGNSKEKPNYGQSQYSYSA 34


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 73  AYXHEAETXAGGDSGTLAG 129
           AY ++A+  A  D+GT+AG
Sbjct: 179 AYFNDAQRQATKDAGTIAG 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 768,897
Number of Sequences: 5004
Number of extensions: 7612
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)