Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332G01f
(301 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0730 + 10784784-10785341 28 1.2
08_01_0554 - 4851698-4851943,4852041-4852760 28 1.6
06_01_0207 + 1579343-1579529,1579610-1579659,1579896-1580092,158... 27 2.1
06_03_0526 + 21771519-21771607,21771685-21771810,21771890-217720... 27 2.7
08_02_1326 - 26158279-26159712 27 3.6
12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406 26 4.7
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 26 4.7
03_05_0530 - 25306788-25306919,25307446-25308037,25308152-253089... 26 4.7
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 26 4.7
11_06_0172 - 20877029-20878049,20880129-20880400 26 6.3
04_03_0228 + 13004688-13005044 26 6.3
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 25 8.3
01_05_0008 - 17063377-17063813,17064937-17065052,17065284-170657... 25 8.3
>03_02_0730 + 10784784-10785341
Length = 185
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 216 SPRGDWRPPRGDARGPR 166
SP W+P GD RGPR
Sbjct: 41 SPPATWQPGEGDVRGPR 57
>08_01_0554 - 4851698-4851943,4852041-4852760
Length = 321
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 64 FA*AYXHEAETXAGGDSGTLAGDSTGSKTDSARQPGPA 177
F+ Y +T A +G +A D G++TD A +P P+
Sbjct: 197 FSDDYSFARKTAAPPFAGLVAADEHGARTDKALRPAPS 234
>06_01_0207 +
1579343-1579529,1579610-1579659,1579896-1580092,
1580343-1580469,1580562-1580693
Length = 230
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 91 ETXAGGDSGTLAGDSTGSKTDSARQPGPAR 180
E GG+ G +AGDS+G + +S AR
Sbjct: 47 EKHKGGEKGAVAGDSSGKQGESDAAKNKAR 76
>06_03_0526 +
21771519-21771607,21771685-21771810,21771890-21772010,
21772123-21772851,21772954-21773349,21774594-21774665,
21774741-21774803,21775236-21775337
Length = 565
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -2
Query: 222 PASPRGDWRPPRGDARGPRLPR 157
PA P WRPPR AR PR
Sbjct: 230 PAPPPPLWRPPRRRARSSSSPR 251
>08_02_1326 - 26158279-26159712
Length = 477
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 124 AGDSTGSKTDSARQPGPARI 183
AG+STG+K+ R P P R+
Sbjct: 361 AGESTGTKSGKKRGPAPLRV 380
>12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406
Length = 351
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 100 AGGDSGTLAGDSTGSKTDSARQPGPAR 180
AG D+G L + ++ SAR P PAR
Sbjct: 96 AGTDNGGLGATARRKRSASARSPPPAR 122
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -2
Query: 285 YDVVLGISVGHVVMSE**GRDPASPRGDWRPPRGDARGPRL--PRAVR 148
+ VLG SV + R +P+ W P GD RG + P A++
Sbjct: 444 FQEVLGRSVNGTTYAGIRARTTGAPQNHWFGPAGDPRGAGIGTPEAIK 491
>03_05_0530 -
25306788-25306919,25307446-25308037,25308152-25308975,
25309533-25309592,25310115-25310180,25310318-25310461,
25310616-25310756,25310898-25311056,25311818-25311884,
25311986-25312158,25312237-25312333,25312410-25312528,
25312867-25312951,25313120-25313321,25314456-25314633
Length = 1012
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 112 SGTLAGDSTGSKTDSARQPGP 174
S T GD+TG+ D+ RQP P
Sbjct: 730 SFTREGDATGTHADAQRQPWP 750
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = -2
Query: 228 RDPASPRG---DWRPPRGDARGPRLPR 157
RD SPRG D R PRG R R P+
Sbjct: 184 RDSRSPRGSPRDSRSPRGSPRDSRSPK 210
>11_06_0172 - 20877029-20878049,20880129-20880400
Length = 430
Score = 25.8 bits (54), Expect = 6.3
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2
Query: 201 WRPPRGDARG 172
WRPP+GD RG
Sbjct: 296 WRPPQGDGRG 305
>04_03_0228 + 13004688-13005044
Length = 118
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2
Query: 185 PRGGRQSPRGDAG 223
P GGR+SP GDAG
Sbjct: 86 PDGGRRSPPGDAG 98
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 103 GGDSGTLAGDSTGSKTDSARQPGPA 177
GG SG++AGD++ + S+R PA
Sbjct: 200 GGGSGSVAGDTSQIQRPSSRPISPA 224
>01_05_0008 -
17063377-17063813,17064937-17065052,17065284-17065728,
17066421-17066760
Length = 445
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -2
Query: 219 ASPRGDWRPPRGDARGPRLPRA 154
A PR D PPR DAR LP A
Sbjct: 79 ARPRADCPPPRLDARFLALPDA 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,292,737
Number of Sequences: 37544
Number of extensions: 81827
Number of successful extensions: 440
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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