Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332G01f
         (301 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr...    27   1.9  
Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical pr...    27   3.3  
U21323-10|AAW30670.1|  805|Caenorhabditis elegans Hypothetical p...    26   5.8  
U21323-9|AAA62553.1|  971|Caenorhabditis elegans Hypothetical pr...    26   5.8  

>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical protein
            ZK897.1 protein.
          Length = 1396

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 118  TLAGDSTGSKTDSARQPGPARIASG 192
            T+AGD++   T +ARQP  A+ +SG
Sbjct: 1261 TMAGDTSAQATTTARQPLTAQQSSG 1285


>Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical
           protein T01C3.7 protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +2

Query: 182 SPRGGRQSPRGDAG 223
           SPRGGR SPRG  G
Sbjct: 93  SPRGGRGSPRGGRG 106


>Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical
           protein F34D10.4 protein.
          Length = 692

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 228 RDPASPRGDWRPPRGDARG 172
           R P+ PRGD+R  R  +RG
Sbjct: 275 RSPSRPRGDFRRDRSQSRG 293


>U21323-10|AAW30670.1|  805|Caenorhabditis elegans Hypothetical
           protein C45G9.10b protein.
          Length = 805

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 221 GSRPHHSDITTCPTEMPSTTSY 286
           GSR      TT PT +P TTSY
Sbjct: 619 GSRTFERPQTTSPTYIPVTTSY 640


>U21323-9|AAA62553.1|  971|Caenorhabditis elegans Hypothetical
           protein C45G9.10a protein.
          Length = 971

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 221 GSRPHHSDITTCPTEMPSTTSY 286
           GSR      TT PT +P TTSY
Sbjct: 785 GSRTFERPQTTSPTYIPVTTSY 806


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,594,386
Number of Sequences: 27780
Number of extensions: 52299
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)