Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332F12f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY095086-1|AAM11414.1|  330|Drosophila melanogaster RE56341p pro...    28   8.8  
AY075545-1|AAL68352.1|  384|Drosophila melanogaster RH43215p pro...    28   8.8  
AE014296-2391|AAF49733.1|  330|Drosophila melanogaster CG9238-PA...    28   8.8  
AE014296-2390|AAF49732.1|  384|Drosophila melanogaster CG9238-PB...    28   8.8  

>AY095086-1|AAM11414.1|  330|Drosophila melanogaster RE56341p
           protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 9   SHSCGCCKDRNVLSTQSNGPRE*IILA 89
           SHSC C KD +     S GP++ +I A
Sbjct: 83  SHSCICSKDSDSNGEVSRGPKKHVIFA 109


>AY075545-1|AAL68352.1|  384|Drosophila melanogaster RH43215p
           protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 9   SHSCGCCKDRNVLSTQSNGPRE*IILA 89
           SHSC C KD +     S GP++ +I A
Sbjct: 137 SHSCICSKDSDSNGEVSRGPKKHVIFA 163


>AE014296-2391|AAF49733.1|  330|Drosophila melanogaster CG9238-PA,
           isoform A protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 9   SHSCGCCKDRNVLSTQSNGPRE*IILA 89
           SHSC C KD +     S GP++ +I A
Sbjct: 83  SHSCICSKDSDSNGEVSRGPKKHVIFA 109


>AE014296-2390|AAF49732.1|  384|Drosophila melanogaster CG9238-PB,
           isoform B protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 9   SHSCGCCKDRNVLSTQSNGPRE*IILA 89
           SHSC C KD +     S GP++ +I A
Sbjct: 137 SHSCICSKDSDSNGEVSRGPKKHVIFA 163


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,667,822
Number of Sequences: 53049
Number of extensions: 283119
Number of successful extensions: 529
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)