Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332F12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79757-6|CAB02127.1|  350|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z83238-1|CAB05792.1|  339|Caenorhabditis elegans Hypothetical pr...    29   2.7  

>Z79757-6|CAB02127.1|  350|Caenorhabditis elegans Hypothetical
           protein F55B12.6 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 286 IFLGLLKSLDSTTVRFVKINFIFRYFNF-KLVYCKV 182
           + L LL S    T+ F  I+F+FRYF   +LV+ KV
Sbjct: 91  VLLILLCSCFGVTITFFAIHFVFRYFALERLVFRKV 126


>Z83238-1|CAB05792.1|  339|Caenorhabditis elegans Hypothetical
           protein T08G3.1 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 331 YINDRQ*PYSMRKKNIFLGLLKSLDSTTVRFVKINFIFRYFNFKLVYCKVH 179
           YIN+R    S     + L +  SL    +  + + FI+RY     V+C +H
Sbjct: 77  YINNRPFDASKEFLTVLLAVYCSLYCAAISLLAVQFIYRYI---AVFCPIH 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,966,537
Number of Sequences: 27780
Number of extensions: 158678
Number of successful extensions: 347
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)