Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332F10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    23   2.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   3.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   7.7  

>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
          peptide protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 92 TYFFNINILGT*YFIPSIINIKTN 21
          T+FF   IL T YF+   ++IK N
Sbjct: 8  TFFFLSVILITSYFVTPTMSIKCN 31


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 338 QIASVKNSFYVPTLIIYYYTFLILC 264
           QI +   SFY+P  ++    + I C
Sbjct: 203 QIYATLGSFYIPLFVMIQVYYKIFC 227


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 101 SCGTYFFNINILGT*YFI 48
           +CGT +FN  +L   Y +
Sbjct: 201 ACGTDYFNRGLLSASYLV 218


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 101 SCGTYFFNINILGT*YFI 48
           +CGT +FN  +L   Y +
Sbjct: 77  ACGTDYFNRGLLSASYLV 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,687
Number of Sequences: 438
Number of extensions: 2773
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)