Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332F09f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0737 - 13529180-13529543,13530661-13531178 31 0.74
11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793 29 2.3
07_03_0091 + 13312904-13313647 29 3.0
10_08_0100 + 14788426-14789097 28 4.0
01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735 28 4.0
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 4.0
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134... 28 5.2
09_02_0081 - 4041364-4041555,4041830-4041911,4042192-4042443,404... 27 6.9
07_03_0089 - 13300902-13301645 27 6.9
01_02_0007 + 10132380-10133201 27 6.9
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 27 9.1
08_02_1319 + 26117353-26117784 27 9.1
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699... 27 9.1
03_05_0530 - 25306788-25306919,25307446-25308037,25308152-253089... 27 9.1
>02_02_0737 - 13529180-13529543,13530661-13531178
Length = 293
Score = 30.7 bits (66), Expect = 0.74
Identities = 25/65 (38%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +2
Query: 332 PLPGRK---ENPLPRE-SARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTC 499
PL GR+ +P PR R P PR PS CQ A PSR ALPS
Sbjct: 70 PLQGRRPAESSPQPRPPQVRRPQPPRRHRSTAPSSSSCQFQ----AAAPSRPPSALPSPT 125
Query: 500 PSRQT 514
S T
Sbjct: 126 ASSST 130
>11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793
Length = 576
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +2
Query: 308 SLPRRKAHPLPGRKENPLPRESARSP---TLPRCQTCPLPS*RDC 433
S R++ P P +K P P + P R CPLP+ R C
Sbjct: 528 STARKRTRP-PSKKPKPDPEATTSEPWGLRFARANNCPLPAPRSC 571
>07_03_0091 + 13312904-13313647
Length = 247
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/69 (27%), Positives = 24/69 (34%)
Frame = +2
Query: 314 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPS 493
P KA P P K P P S P+ + P PS + + P K P
Sbjct: 166 PSPKADPKPNPKPKPQPEPSPNPKPEPKPEPKPEPSPNPKPNPNPKPEPQPDPKPEPKPQ 225
Query: 494 TCPSRQTRP 520
PS+ P
Sbjct: 226 PEPSQPKLP 234
>10_08_0100 + 14788426-14789097
Length = 223
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 362 PRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTC 499
PR A SP PR C DCQ + R+A P+R + C
Sbjct: 178 PRRPAPSPASPRLPMCSYTCTVDCQTRNVRSA--PTRPSSSTDGGC 221
>01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735
Length = 637
Score = 28.3 bits (60), Expect = 4.0
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +2
Query: 272 PQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS-*RDCQGTSS 448
P N+N + + R + + G P P++ ARSP L R +P ++ + +S
Sbjct: 210 PSNKNMLVADAAA--RSSSLKVAGEGPKPKPKQRARSPPLRR----DVPELFKEAKSSSK 263
Query: 449 RTATLPSRKEGALPSTCPSR 508
R +T P R++ + P PSR
Sbjct: 264 RFSTPPPRRKPSSP-PAPSR 282
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 314 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPL 415
PRR A P GR +P P S RSP PR P+
Sbjct: 229 PRRSASPPNGRNRSPTPNAS-RSPA-PRDSRSPM 260
>01_05_0724 -
24612712-24612852,24612985-24613038,24613340-24613429,
24613499-24613780,24613926-24614119,24614379-24614508,
24614610-24614690,24614766-24614891,24615019-24615076,
24615319-24615380,24615753-24615803,24615946-24616065,
24616280-24616403,24616832-24616920,24617304-24617396,
24617910-24618063,24618673-24619178
Length = 784
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 332 PLPGRKENPLPRESARSPTLPRCQTCPLP 418
PLP R+ PLP SA P + PLP
Sbjct: 16 PLPPRRRLPLPSSSASFPRAGHHRRLPLP 44
>09_02_0081 -
4041364-4041555,4041830-4041911,4042192-4042443,
4042529-4044001,4044222-4044733,4044824-4045021
Length = 902
Score = 27.5 bits (58), Expect = 6.9
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 338 PGRKENPLPRESARSPTLP--RCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQ 511
P E P PR R PT P Q PLP+ + Q + T P+++ P PS Q
Sbjct: 497 PSPPEPPSPRHPPRQPTPPPSPSQQPPLPTPQPVQA----SPTSPTKQHA--PPAPPSVQ 550
Query: 512 TRP 520
T P
Sbjct: 551 TSP 553
>07_03_0089 - 13300902-13301645
Length = 247
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/69 (27%), Positives = 23/69 (33%)
Frame = +2
Query: 314 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPS 493
P KA P P K P P S P+ + P PS + + P K P
Sbjct: 166 PSPKADPKPNPKPKPQPEPSPNPKPEPKPEPKPEPSPNPKPNPNPKPEPQPDPKPEPKPQ 225
Query: 494 TCPSRQTRP 520
PS P
Sbjct: 226 PEPSLPKPP 234
>01_02_0007 + 10132380-10133201
Length = 273
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 314 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLP 418
PR + PLP NP P+ + P+ Q PLP
Sbjct: 54 PRPQPQPLPQPNPNPQPQPLPQPQPQPQPQPQPLP 88
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 27.1 bits (57), Expect = 9.1
Identities = 21/83 (25%), Positives = 30/83 (36%)
Frame = +2
Query: 266 GSPQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTS 445
GS N + S S + P P P +A + P P PS R S
Sbjct: 136 GSSTVDNTQRSSRSSASPIRLSPSPRSMSRTRPSSAASRSSPPFALQPPTPSWRPSTPPS 195
Query: 446 SRTATLPSRKEGALPSTCPSRQT 514
++T T P R + P R++
Sbjct: 196 AKTLTPPRRSPSPASTLTPPRRS 218
>08_02_1319 + 26117353-26117784
Length = 143
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 398 CQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQTRP 520
C PL D +GTS L ++ + P TCP++ RP
Sbjct: 76 CTGKPLEMLLD-RGTSKPDKYLKAKSDSVRPRTCPAKSGRP 115
>06_01_0906 +
6990892-6991615,6992480-6992679,6992822-6993002,
6993855-6994046,6994492-6994724,6995537-6995638,
6995776-6995826,6996234-6996338,6997287-6997353,
6997946-6997962
Length = 623
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 299 SSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQ 403
+S S P+RK PGRK P P S + P +
Sbjct: 7 ASTSSPKRKPGRRPGRKPKPPPAPSPAAAPAPAAE 41
>03_05_0530 -
25306788-25306919,25307446-25308037,25308152-25308975,
25309533-25309592,25310115-25310180,25310318-25310461,
25310616-25310756,25310898-25311056,25311818-25311884,
25311986-25312158,25312237-25312333,25312410-25312528,
25312867-25312951,25313120-25313321,25314456-25314633
Length = 1012
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +2
Query: 335 LPGRKENPLPRESARSPTLPRCQTCP 412
LPG NP R AR P LPR T P
Sbjct: 639 LPGVVVNPATRRWARLPPLPRHFTVP 664
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,042,014
Number of Sequences: 37544
Number of extensions: 185628
Number of successful extensions: 703
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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