Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332F07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    30   0.24 
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   3.9  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   3.9  
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi...    25   9.0  

>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 194 SNDRRSSQTCRNRNNRGSYGCGHNASSSDAG*YYGRLGNYSRSGSH 331
           +++  S+ T  + NN G+YG  +N  S  A   YG  G+ +  G++
Sbjct: 49  NDNNNSNSTYGSSNNYGNYGSSNNYGSYGASNTYGSNGSSNNYGNY 94



 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 233 NNRGSYGCGHNASSSDAG*YYGRLGNYSRSGSHKRLLAYYRVEPIHR 373
           NN GSYG  +   S+ +   YG  G  + +G     +   R +P  R
Sbjct: 71  NNYGSYGASNTYGSNGSSNNYGNYGATNSNGDAGYSITPIRNDPYAR 117


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 311 YSRSGSHKRLLAYYRVEPIHRVSRIINSTTGTVR 412
           YS +  HK LLA+ +V P   ++R   +  GT R
Sbjct: 885 YSNTDKHKNLLAFAKV-PQETMTREFQANVGTPR 917


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 496  ADSLTGDYKSXQEERNGDLVQGSYSLVEPDGTRRTVDYSADSVNGFNAVVRK 341
            A ++T   +S   +RNG L  GS ++    G  +    S DSV G+N  V++
Sbjct: 880  AGTITDFSRSVNNQRNGHLTVGSDAVCLSLGDSQFHRLSCDSV-GYNIEVKR 930


>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
           Spa1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
 Frame = +2

Query: 137 WSTIRKRSCIG--SGVLRDGGSNDRRSSQTCRNRNNRGSYGCGHNASSSDAG*YYGRLGN 310
           W +   R+C+   SG+L++   N+        N  +RG Y C      +++  Y+  +  
Sbjct: 90  WISDSFRTCLPKPSGILKEQTVNEEEG-----NSRHRGKYDCDERIGVAESMNYWHGIVR 144

Query: 311 YSRSGSHKRLLAYYRVEPIH 370
               GS    L     E +H
Sbjct: 145 TEEDGSKTLFLIPESWEDVH 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,249,929
Number of Sequences: 5004
Number of extensions: 19077
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)