Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332F07f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420 33 0.18
04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526... 32 0.24
10_08_0236 + 16078162-16078731 29 2.3
07_03_1093 + 23912303-23912467,23912671-23912801,23913079-239130... 29 2.3
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 29 2.3
05_01_0576 - 5130589-5131995 29 3.0
01_03_0046 - 11937619-11938260 29 3.0
08_02_0826 - 21583507-21583555,21584000-21584679 28 5.2
08_02_0482 - 17643603-17643955,17644024-17646604 28 5.2
09_06_0123 - 20997498-20997512,20998015-20998100,20999066-209991... 27 9.1
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 27 9.1
>05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420
Length = 433
Score = 32.7 bits (71), Expect = 0.18
Identities = 20/53 (37%), Positives = 23/53 (43%)
Frame = +2
Query: 167 GSGVLRDGGSNDRRSSQTCRNRNNRGSYGCGHNASSSDAG*YYGRLGNYSRSG 325
G G R GG R S + + R G GCG SD G YG G+ S G
Sbjct: 36 GGGGPRGGGGGGPRGSGSSKPRRGDGGLGCG-RGDDSDLGLGYGGGGSGSDDG 87
>04_03_0941 -
20950190-20951088,20952436-20952478,20952580-20952606,
20953189-20953301,20953872-20954715,20955740-20955790,
20956026-20956126,20956205-20956244,20956360-20957124
Length = 960
Score = 32.3 bits (70), Expect = 0.24
Identities = 25/85 (29%), Positives = 35/85 (41%)
Frame = +2
Query: 74 DVSGDGSRIRCS*WGRVGSSNWSTIRKRSCIGSGVLRDGGSNDRRSSQTCRNRNNRGSYG 253
D SG G + S +S + GSG G+ND S N+++ G YG
Sbjct: 748 DYSGGGGYNKSGADDYSSSGGYSKSGTDNYSGSGGYNKSGNNDYSGSGGGYNKSSAGDYG 807
Query: 254 CGHNASSSDAG*YYGRLGNYSRSGS 328
+ SS+ YGR Y +S S
Sbjct: 808 SEYKDSSTGD---YGRGDEYKKSSS 829
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 167 GSGVLRDGGSNDRRSSQTCR---NRNNRGSYGCGHNASSSDAG*YYGRLGNYSRSGS 328
G+G GG ++ S+ N++ G YG G SDAG Y G Y++S +
Sbjct: 892 GTGEYGSGGGYNKSSTDNYESGYNKSGTGDYGSGGGYDKSDAGDY---TGGYNKSST 945
>10_08_0236 + 16078162-16078731
Length = 189
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +2
Query: 191 GSNDRRSSQTCRNRNNRGSYGCGHNASSSDAG*YYGRLGNYSRSGS 328
GS + S + + N G YG +A G G+ G Y +GS
Sbjct: 88 GSGNGSGSSSSQTSNGEGGYGGESDAGGGGGGGGQGQAGGYGSTGS 133
>07_03_1093 +
23912303-23912467,23912671-23912801,23913079-23913087,
23913146-23913228,23914494-23914596,23915988-23916066,
23916174-23916274,23916371-23916479
Length = 259
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 433 GSYSLVEPDGTRRTVDYSADSVNGFNAVV 347
G+Y LV D V+YS +V+G+N VV
Sbjct: 109 GNYFLVRHDAAVSCVEYSYSTVSGYNLVV 137
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 29.1 bits (62), Expect = 2.3
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = +2
Query: 53 CQSCLESDVSGDGSRIRCS*WGRVGSSNWSTIRKRSCIGSGVLRDGGSNDRRSSQTCRNR 232
C +C SG G+ GSS+ S S G G+ S+ +
Sbjct: 211 CSTCGSGSRSGSGAGGGSYSGSNSGSSSSSGSGSNSNSIGGSGSSSGAGSGSSASSGYGG 270
Query: 233 NNRGSY-GCGHNASSSDAG*YYGRLGNYSRSGS 328
++ GS G G ++SS G YG G S SGS
Sbjct: 271 SSSGSMSGSGSSSSSGSTGMSYGSSGAGSFSGS 303
>05_01_0576 - 5130589-5131995
Length = 468
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 164 IGSGVLRDGGSNDRRSS-QTCRNRNNRGSYGCGHNASSSDAG*YYGRL 304
+ GV+ GG+ R ++ + R+R G G+ ASSS +YGRL
Sbjct: 421 VDDGVVAGGGNTVRSAAAEQVRDRIAHGLLHAGNTASSSYQDYHYGRL 468
>01_03_0046 - 11937619-11938260
Length = 213
Score = 28.7 bits (61), Expect = 3.0
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 116 GRVGSSNWSTIRKRSCIGSGVLR-DGGSNDRRSSQTCRNRN-NRGSYGCGHNASSSD 280
G GS W RKR G+G G S+DRR S TC + + G+ G G SS +
Sbjct: 66 GGGGSFRWLGPRKRRRRGAGSRSVSGRSSDRRRSGTCSDFHVTCGAGGGGATDSSGE 122
>08_02_0826 - 21583507-21583555,21584000-21584679
Length = 242
Score = 27.9 bits (59), Expect = 5.2
Identities = 24/68 (35%), Positives = 28/68 (41%)
Frame = +2
Query: 125 GSSNWSTIRKRSCIGSGVLRDGGSNDRRSSQTCRNRNNRGSYGCGHNASSSDAG*YYGRL 304
GS +WS S GS GG + SS +N G G G A S AG Y G
Sbjct: 102 GSGSWSG----SSSGSSSRSGGGGSSAGSSAESGAGSNAGPGGAGSYAGSR-AGSYAGSN 156
Query: 305 GNYSRSGS 328
G SG+
Sbjct: 157 GGDGGSGA 164
>08_02_0482 - 17643603-17643955,17644024-17646604
Length = 977
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -2
Query: 517 YRFGYDVADSLTGDYKSXQEERNGDLVQGSYSLVEPDGTRRTVD 386
Y FG + + LTG + E DLV+ VE DG R +D
Sbjct: 875 YSFGVVMLELLTGKAPAGPELGEKDLVRWVCGCVERDGVDRVLD 918
>09_06_0123 -
20997498-20997512,20998015-20998100,20999066-20999198,
20999264-20999341,21000130-21000216,21001164-21001254,
21001338-21001488,21001567-21002296,21002404-21002820
Length = 595
Score = 27.1 bits (57), Expect = 9.1
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Frame = +2
Query: 80 SGDGSRIRCS*WGRVGSSNWSTIRKRSCI--GSGVLRDGGSNDRRSSQTCRNRNNRGSYG 253
SG GS S +G S+N + + I SG + RR S NN S G
Sbjct: 223 SGSGSN---SSYGHGNSTNGAGGANMNNIIHSSGTSSSANDSSRRISGNNNWNNNGRSAG 279
Query: 254 CGHNASSSDAG*YYGRLGNYSRSG 325
HNA+ S G N R+G
Sbjct: 280 SNHNAAGSGDGSNRNLWNNNGRNG 303
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 221 CRNRNNRGSYGCGHNASSSDAG*YYGRLGNYSRSG 325
C +++R + G ++SSS+A YGR N SG
Sbjct: 859 CSCQSDRANSGSSASSSSSEASTLYGRKKNKKSSG 893
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,443,349
Number of Sequences: 37544
Number of extensions: 150353
Number of successful extensions: 489
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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