Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332F07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-14|CAB11553.1|  524|Caenorhabditis elegans Hypothetical p...    32   0.29 
Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U42991-1|AAA85197.1|  118|Caenorhabditis elegans RNA binding pro...    28   3.5  
U24124-1|AAA77029.1|  118|Caenorhabditis elegans RRM-type RNA bi...    28   3.5  
AF038614-8|AAB92055.1|  118|Caenorhabditis elegans Hypothetical ...    28   3.5  

>Z98866-14|CAB11553.1|  524|Caenorhabditis elegans Hypothetical
           protein Y49E10.17 protein.
          Length = 524

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 23/84 (27%), Positives = 35/84 (41%)
 Frame = +2

Query: 35  NQSLFACQSCLESDVSGDGSRIRCS*WGRVGSSNWSTIRKRSCIGSGVLRDGGSNDRRSS 214
           + S  +C S   S++S    +     +   GSSN S+   R    +G     GS    SS
Sbjct: 83  SSSTVSCTSLGSSNISSSSRQPSNGSFRSSGSSNGSSSSSRRS-SNGSSSSSGSTSDNSS 141

Query: 215 QTCRNRNNRGSYGCGHNASSSDAG 286
               + + R S G   ++SSS  G
Sbjct: 142 SNISSSSRRSSNGSSRSSSSSSVG 165


>Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical
           protein T01C3.7 protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
 Frame = +2

Query: 167 GSGVLRDGGSNDRRSSQTCRNRNNRGSYGCGHNAS--SSDAG*YYGRLGNYSRSG 325
           G G  R G   DR  S+       RG YG G   S    D G + G  G   R G
Sbjct: 11  GGGGFRGGRGGDRGGSRGGFGGGGRGGYGGGDRGSFGGGDRGGFRGGRGGGDRGG 65


>U42991-1|AAA85197.1|  118|Caenorhabditis elegans RNA binding
           protein protein.
          Length = 118

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 242 GSYGCGHNASSSDAG*YYGRLGNYSRSGSHKRLLAYY 352
           G  G G+       G YYG+ G Y + G +     YY
Sbjct: 48  GGNGYGNRGGYGQQGGYYGQQGGYGQQGGYGGNQGYY 84


>U24124-1|AAA77029.1|  118|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 118

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 242 GSYGCGHNASSSDAG*YYGRLGNYSRSGSHKRLLAYY 352
           G  G G+       G YYG+ G Y + G +     YY
Sbjct: 48  GGNGYGNRGGYGQQGGYYGQQGGYGQQGGYGGNQGYY 84


>AF038614-8|AAB92055.1|  118|Caenorhabditis elegans Hypothetical
           protein F15E6.3 protein.
          Length = 118

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 242 GSYGCGHNASSSDAG*YYGRLGNYSRSGSHKRLLAYY 352
           G  G G+       G YYG+ G Y + G +     YY
Sbjct: 48  GGNGYGNRGGYGQQGGYYGQQGGYGQQGGYGGNQGYY 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,040,028
Number of Sequences: 27780
Number of extensions: 113893
Number of successful extensions: 409
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)