Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332F06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 42 4e-05
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 40 3e-04
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 36 0.005
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 32 0.045
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 32 0.060
SPBC216.06c |swi1||replication fork protection complex subunit S... 30 0.18
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 28 0.97
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 28 0.97
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce... 27 1.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 2.2
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 26 3.0
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 26 3.0
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c... 26 3.9
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 25 5.2
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 6.8
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 25 6.8
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 6.8
SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr... 25 9.0
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 42.3 bits (95), Expect = 4e-05
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Frame = +1
Query: 187 LDLSYNSIETLKGLEQFARLEELI-LDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLV 363
LDL + I ++ L + + I +N + FP++ L+TL NN+I + +
Sbjct: 23 LDLRWYQIPIIENLGVLRDVHDAIDFTDNDIRYLGNFPRMKRLQTLLCGNNRITAIAPDI 82
Query: 364 DKIRENFPVLS----YLSLLSN----KACPN--QLSDVDKDDSDYQRYRYYVIYKIPHLR 513
K+ N LS +L +++ +CP LS +D + Q YR Y+I++IP L
Sbjct: 83 GKVLPNLKTLSLAQNHLQEIADLDPLASCPQLTNLSCIDNPVAQKQYYRLYLIWRIPSLH 142
Query: 514 FL 519
L
Sbjct: 143 IL 144
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 39.5 bits (88), Expect = 3e-04
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +1
Query: 187 LDLSYNSIETLKGLEQFARLEELILDNNQL--SDGIKFPKLPYLKTLSLNNNQIANL 351
LD+SYN +E L GL L EL +D+N L DGI+ L L LS NN+I L
Sbjct: 673 LDISYNQLEDLTGLSSLIHLRELKVDSNHLWSLDGIQ--HLDGLLKLSACNNRIKEL 727
Score = 35.5 bits (78), Expect = 0.005
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 241 RLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLE 354
RLEEL+L NN++ + + L L L L+NN++ NL+
Sbjct: 736 RLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNLK 773
Score = 33.5 bits (73), Expect = 0.020
Identities = 23/81 (28%), Positives = 41/81 (50%)
Frame = +1
Query: 112 LSYCGQDCKKIPPALQKMYGAKVKCLDLSYNSIETLKGLEQFARLEELILDNNQLSDGIK 291
LS C K++ ++ +++ L L N IE ++ + L L LDNN+L++
Sbjct: 717 LSACNNRIKELSFTNSNLH--RLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNLKA 774
Query: 292 FPKLPYLKTLSLNNNQIANLE 354
+ +L+ L ++NN I LE
Sbjct: 775 SQPMIHLRILRISNNAIHQLE 795
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 35.5 bits (78), Expect = 0.005
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 187 LDLSYNSIETLKGLEQFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDL 360
LDLS+N+I+T++ + LE L N++ L L L L N+I +E+L
Sbjct: 109 LDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNLELGGNKIRVIENL 166
Score = 34.7 bits (76), Expect = 0.008
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +1
Query: 178 VKCLDLSYNSIETLK--GLEQFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANL 351
V C++L + I+++ GLE+F L+ L L NQ+ P+ L L L +N I +
Sbjct: 40 VDCVELIQSRIQSMASLGLERFKNLQSLCLRQNQIKKIESVPET--LTELDLYDNLIVRI 97
Query: 352 EDLVDKIRENFPVLSYLSLLSN 417
E+L +N L+YL L N
Sbjct: 98 ENL-----DNVKNLTYLDLSFN 114
Score = 32.3 bits (70), Expect = 0.045
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +1
Query: 187 LDLSYNSIETLKGLEQFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLVD 366
L +S+N + + G+E LE L + NN + L L L +NN++++ +++ D
Sbjct: 220 LYVSHNGLTSFSGIEVLENLEILDVSNNMIKHLSYLAGLKNLVELWASNNELSSFQEIED 279
Query: 367 KI 372
++
Sbjct: 280 EL 281
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 32.3 bits (70), Expect = 0.045
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +1
Query: 193 LSYNSIETLKGLE-QFARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLVDK 369
LS N + +L E +EEL L +N+L + F L Y K L + N L ++ K
Sbjct: 790 LSGNPVSSLSSQEFVMPTVEELYLVDNRLGNDC-FTALEYFKCLKVLNLSYNYLTEIPSK 848
Query: 370 IRENFPVLSYLSLLSNK 420
+NF L +L + N+
Sbjct: 849 FFQNFSDLKHLFVSGNE 865
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 178 VKCLDLSYNSIETLKGLEQFARLEELILDNNQLS 279
++ +DLSYN+I + L + +L + + N LS
Sbjct: 597 LETIDLSYNAITNIASLSECPKLNSINVACNLLS 630
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 31.9 bits (69), Expect = 0.060
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 196 SYNSIETLKGLEQFA-RLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLVDKI 372
+++ +E + GL+ + E+ LD + + K+P L L LN N+ + +D+VD+I
Sbjct: 267 AFSKLENI-GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEI 325
Query: 373 RENF 384
RE F
Sbjct: 326 REVF 329
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 30.3 bits (65), Expect = 0.18
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 388 VLSYLSLLSNKACPNQLSDVDKDDSDYQRYR 480
+LS L L++N CP LSD DKD ++Y+ +R
Sbjct: 58 LLSSLQLVTNDICPI-LSDWDKDITNYRNWR 87
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 295 PKLPYLKTLSLNNNQIANLEDLVDKIRENFPVLSYLSLLSN 417
PK K + +Q A+ +D+++K++ + P+L YL+ N
Sbjct: 121 PKFQEFKVQRESYSQTASNDDVIEKLQTSTPLLQYLAEKKN 161
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 27.9 bits (59), Expect = 0.97
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 160 SVRPVEFFYSLARNSLERYW*RIKQN 83
+ + FFY L +N L++ W R++ N
Sbjct: 172 NTKKTRFFYPLGKNCLQKLWGRVETN 197
>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 498
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 391 LSYLSLLSNKACPNQLSDVDKDDSDYQRYR 480
++Y+ LSN P+ +SD D DD D +R
Sbjct: 407 VNYIQPLSNANGPSAVSDSDDDDDDPNDFR 436
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +1
Query: 190 DLSYNSIET-LKGLEQFARLEELILDNNQLSDGIKFPKLPYLKT-LSLNNNQIAN 348
DLS +ET LKG E ++ ++ I DN++ P++ ++T S+ N I N
Sbjct: 155 DLSKEDLETTLKGDENYSSSQKEIYDNDETIPKPPSPEVEKIETSTSVENAYITN 209
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +1
Query: 328 NNNQIANLEDLVDKIRENFPVLSYLSLLSNKACPNQLSDVDKDDSDYQ 471
NN+ I + E ++++ +EN ++ L + + SD+ + +SD Q
Sbjct: 402 NNSMIRDSESIINERKENIGLIGVKRSLHDSTTSHNKSDLMRTNSDPQ 449
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 26.2 bits (55), Expect = 3.0
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +1
Query: 304 PYLKTLSLNNNQIANLEDLVD-KIRENFPVLSYLSLLSNKACPNQLSDVDKDDSDYQRYR 480
P L LSL NN+I +L DL + P L L L+ N ++ DYQR
Sbjct: 240 PKLLNLSLANNRITSLSDLDPWSPKTKLPELQELVLVGNPI----VTTFANRAMDYQR-- 293
Query: 481 YYVIYKIPHLRFL 519
++ + P LR L
Sbjct: 294 -EMVSRFPKLRLL 305
>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 3.9
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +1
Query: 238 ARLEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLVDKIRENFPVLSYLSLLSN 417
A E L+L +NQ S K ++ + L NN +A+ L + + L Y+SL+ N
Sbjct: 67 ALFERLLLSSNQKSTS-KSNQM-----IKLLNNSLAHNNGLPSQRCNHDSKLVYMSLVQN 120
Query: 418 KACPNQLSD 444
P Q S+
Sbjct: 121 NGLPGQRSN 129
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -2
Query: 448 PRRKVGWDTLCYLED*GKTTRGSSPLFYQRDPPNWLSDYY*GTEFLN 308
PRR LC + +T SP PP +LS+ G +FLN
Sbjct: 438 PRRTYSGRLLCGPNNYEVSTIMRSPTISTVPPPKYLSNSINGAKFLN 484
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 67 ETHINNFALSFTNNVLSYCGQDCKKIPPALQKMYGAKVKCLDLSYNSIETLKGLEQFARL 246
E ++ +F +L Q + L+KM G K D + ET+ LEQ +
Sbjct: 464 EERVSEVERTFLTKLLEESAQGIEYTDQKLEKMGGWMKKLQDENSEKTETIAQLEQI--I 521
Query: 247 EEL 255
EEL
Sbjct: 522 EEL 524
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 326 RDRVFKYGNFGNLIPSLNWLLSKINSSSLANCS 228
+D KY GN PS++ ++ +NS++ +N S
Sbjct: 273 KDMAIKYPKPGNPNPSVSLFVADLNSNASSNFS 305
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 295 PKLPYLKTLSLNNNQIA-NLEDLVDKIRENFPVLSYLSLLSNKACPNQLSDVDKDDSDYQ 471
P +P L+ + + ++ NLE+ + ++E FP + +S K N ++ + + ++
Sbjct: 1664 PMIPNNTELNEDTSAVSRNLENATNDLKETFPTTTTISTARAKPGNNDINTILRRNNSRG 1723
Query: 472 RYR 480
R R
Sbjct: 1724 RRR 1726
>SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 244 LEELILDNNQLSDGIKFPKLPYLKTLSLNNNQIANLEDLVDKIRE 378
+ ++I DN + D I+ P+L LK LN A V +RE
Sbjct: 160 IRDVIEDNREELDAIEDPQLRRLKLAELNTRAQAISVTRVGFVRE 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,674
Number of Sequences: 5004
Number of extensions: 42190
Number of successful extensions: 151
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -