Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332F05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    26   3.0  
SPCC1442.14c |||adenosine 5'-monophosphoramidase|Schizosaccharom...    25   6.8  
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    25   9.0  

>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 178 RLLLKVWQHIL*FCILKHCISLLLFNYLEKSSITYIFL 291
           +LL+K+   IL +C    C+S  + NYL++SSI   +L
Sbjct: 23  KLLIKIDWFILSYC----CVSYFI-NYLDRSSINNAYL 55


>SPCC1442.14c |||adenosine
           5'-monophosphoramidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 133

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -3

Query: 207 DVLPNLQKQSTYLKPITYNNLNN*SSRI--RYLLHKQYTVIP 88
           D+LP ++K +  + P  YN L N + RI  +++ H  + +IP
Sbjct: 59  DILPLVKKVTKAIGPENYNVLQN-NGRIAHQFVDHVHFHIIP 99


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 299 KTYN*LFEIYVYSYVLREQNLYVQH 373
           +T + L  + VY Y   E+NLYV H
Sbjct: 152 RTEDNLSHVEVYVYEPTEENLYVHH 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,900
Number of Sequences: 5004
Number of extensions: 44177
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)