Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332F05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92786-9|CAB07204.2|  687|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z66567-7|CAC42386.3|  414|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z66567-5|CAA91492.4|  757|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF199013-1|AAG28557.1|  414|Caenorhabditis elegans organic catio...    28   4.7  
Z95559-8|CAB54437.1|  720|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical...    27   6.2  

>Z92786-9|CAB07204.2|  687|Caenorhabditis elegans Hypothetical
           protein F47H4.2 protein.
          Length = 687

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 278 VIE-DFSK*LKSKREIQCFKMQNYKMCCQTFKSNLP 174
           V+E D+ + ++ +REI CFK   YK+  + F  N+P
Sbjct: 652 VVELDYLERIEGEREITCFKFTQYKVPQEIF-DNIP 686


>Z66567-7|CAC42386.3|  414|Caenorhabditis elegans Hypothetical
           protein ZK455.8b protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 184 LLKVWQHIL*FCILKHCISLLLFNYLEKS 270
           L K W  I   C+L H ISL+L  +L +S
Sbjct: 128 LTKSWTMIHLICVLLHIISLMLLYFLPES 156


>Z66567-5|CAA91492.4|  757|Caenorhabditis elegans Hypothetical
           protein ZK455.8a protein.
          Length = 757

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 184 LLKVWQHIL*FCILKHCISLLLFNYLEKS 270
           L K W  I   C+L H ISL+L  +L +S
Sbjct: 416 LTKSWTMIHLICVLLHIISLMLLYFLPES 444


>AF199013-1|AAG28557.1|  414|Caenorhabditis elegans organic cation
           transporter protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 184 LLKVWQHIL*FCILKHCISLLLFNYLEKS 270
           L K W  I   C+L H ISL+L  +L +S
Sbjct: 128 LTKSWTMIHLICVLLHIISLMLLYFLPES 156


>Z95559-8|CAB54437.1|  720|Caenorhabditis elegans Hypothetical
           protein Y41E3.16 protein.
          Length = 720

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +3

Query: 255 LFRKIFNNIYIFI*LKHTTSYLKYMYILTFLGSKICMCNIKLCK*FSKFC 404
           ++R+I    Y  +  KHTTS+LK   I +   ++I + +  +   FS+FC
Sbjct: 600 IWRRILTVYYSILFRKHTTSFLKNKIIFS---TRIVISSPTIYFFFSEFC 646


>AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical
           protein C08F1.8 protein.
          Length = 600

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 300 KHTTSYLKYMYILTFLGSKICMCNIKLCK*FSKFC 404
           +H TSYL ++ I   +G  +C   + L +  S+ C
Sbjct: 444 RHCTSYLSFVTITALMGYAVCNLLVLLVEQLSETC 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,265,568
Number of Sequences: 27780
Number of extensions: 243920
Number of successful extensions: 450
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)