Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332F05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.47 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    24   1.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.3  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 432 YINSNKDHPCKILKIIYTIL 373
           Y  ++KD P  +L IIYTIL
Sbjct: 310 YAQNSKDKPEDVLIIIYTIL 329


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 78 PFCENNIACYLSL 40
          P+C  N +CY SL
Sbjct: 9  PYCRRNFSCYYSL 21


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 213 ILHFETLYFSFAF*LFRKIFNNIYIFI*LKHTTSYLKYM 329
           +  +E +YF     +F +IFN I + + + H +  L+++
Sbjct: 229 VSQWEEVYFLNMASVFMRIFNLICMMLLIGHWSGCLQFL 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,660
Number of Sequences: 438
Number of extensions: 3030
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)