Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332F02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    26   3.0  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    25   5.2  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    25   5.2  

>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 142 RAAKSVDLHNLVSVYIHAKVYGASQLLEYCQGFLLQNMVALLTYDDSVKRLLFGKR 309
           R +K + L    +  IH  V  A  +++ C   +  N+  +   DD   RLL G R
Sbjct: 318 RGSKLISLELTDTARIHVSVINA--IVDCCPNLISLNLSRIFYLDDECVRLLAGCR 371


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 304 KRLPGHNVLGALLTTLQKRIESRKSHSKAR*HCLNSTFLL*TSDPPSLRFGNIKF 468
           K +P H  L    ++ Q+R     S   A  +  +S+F L  S PPS +FG   F
Sbjct: 47  KFVPSH--LSHFGSSQQRRFAPEVSSPLAEPYESSSSFRLSLSSPPSSKFGGPSF 99


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 57  RHTRD*CVGGAGSRFVLPTVAATEALRG 140
           RH    C+GG GS  VL  V  +  L G
Sbjct: 289 RHILLGCIGGVGSFLVLTAVEVSSRLEG 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,881
Number of Sequences: 5004
Number of extensions: 38566
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)