Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332E11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   1.7  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    27   1.7  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   2.2  
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    25   5.2  
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    25   5.2  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    25   6.8  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   6.8  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    25   6.8  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    25   9.0  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   9.0  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    25   9.0  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.0  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 185 LDLEGPIGGFIAISVGAVFVVSVYL 111
           L L GPI GF+   +   FVVSV+L
Sbjct: 441 LGLRGPITGFLQNCLVIAFVVSVFL 465


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -2

Query: 367 FPGLSPSSLVDSSTRVGGATVMPSPAGWNPYLLAPYSITRSLPVSSLYPYLPF 209
           FPG+    +++     GGA ++P P      + +P     ++P + + P +PF
Sbjct: 268 FPGMPAMPMMNVPMGPGGAPLVPPPPP-GMVMASPSPAAATIPGAPVMPNIPF 319


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/46 (28%), Positives = 16/46 (34%)
 Frame = +3

Query: 6   LGLVACTVAQYNEDRAPRYIATEPKEVSTPVPILKQINRHNEDGSY 143
           LG  + T  QY +   P Y    P E     P     N  N+   Y
Sbjct: 652 LGYASNTSQQYQQTSHPAYTTMSPIEYGQAAPAAHYYNERNQYSQY 697


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 2   VSGVSRVYGGTVQ*GPRPSIH 64
           V  + +VYGG+V  G RPS H
Sbjct: 72  VGRLCKVYGGSVNRGMRPSHH 92


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 2   VSGVSRVYGGTVQ*GPRPSIH 64
           V  + +VYGG+V  G RPS H
Sbjct: 72  VGRLCKVYGGSVNRGMRPSHH 92


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = -3

Query: 102 WAQAWRPL*AQWLCIEGRGPHCTVPPYTRLTP 7
           W +A+     +W+C++  G    +  Y R  P
Sbjct: 305 WVEAFNKAMQKWVCVDPFGDASVIGKYRRFEP 336


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -2

Query: 286 WNPYLLAPYSI--TRSLPVSSLYPYL 215
           WN   L  Y    T SLPVSSL+P L
Sbjct: 39  WNENRLYDYGSKSTMSLPVSSLFPAL 64


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -1

Query: 338 RLVDEGRRR-NGDALAGWLESVF 273
           RL ++ RRR NGD LA W   VF
Sbjct: 432 RLKNKKRRRINGDLLADWQPPVF 454


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 270 NKYGFQPAGEGITVAPPTLVDESTRDEGLRP 362
           N YG    G  +T +P   +DE T  E   P
Sbjct: 2   NNYGVSSIGTSLTPSPTGSIDEYTSKEVKHP 32


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 263 RRQQIRIPASRRGHHRCASDPRRRVDQGRG-TQTREVAGRSITVPSP 400
           R+ Q  +P       RCA + + R D G G T  + +   S+   +P
Sbjct: 225 RKVQKEVPTGELYEKRCADEFKTRKDSGNGATYYKVIPDPSVNKDTP 271


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -1

Query: 227 VSIFALHVTRLRLGLDLEGPIGGFIAISVGAVFVVSVYLFQY 102
           +S+  L++  + LG    G + GF+ +S G +  V++ +FQ+
Sbjct: 178 LSLVLLYIASISLGRIYCG-MHGFMDVSTGTILGVTLAIFQW 218


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 436 RLHRPRDPVPNXNHNPS 486
           RLH+   P+PN N N S
Sbjct: 240 RLHQSPSPIPNSNDNDS 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,955,784
Number of Sequences: 5004
Number of extensions: 38560
Number of successful extensions: 125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)