Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332E11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    31   0.50 
Z99270-1|CAB16470.4|  500|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z46241-10|CAH19082.1|  268|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z46241-9|CAA86322.2|  270|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL032648-5|CAA21698.1|  343|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z19158-5|CAJ76965.1|  237|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z19158-4|CAJ76964.1|  719|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U41992-5|AAA83356.1|  549|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF077534-2|AAC26284.1|  648|Caenorhabditis elegans Temporarily a...    27   8.1  
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a...    27   8.1  

>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 26/114 (22%), Positives = 45/114 (39%)
 Frame = +3

Query: 66   ATEPKEVSTPVPILKQINRHNEDGSYTYGYEAADGSFKIETKSQAGDVKGKYGYXDDTGK 245
            A  P+  + P+ I   +    ++    Y Y+    S ++   S        +G  +D  +
Sbjct: 1777 AAVPRHGANPLCIQPVVKGSCQEAHLRYYYDRVTDSCRLFEYSGCDGNANNFGSLEDCQR 1836

Query: 246  LRVIEYGANKYGFQPAGEGITVAPPTLVDESTRDEGLRPGKSQGGRSQYRAPAP 407
            L V+   + K G        T A P +  E   +E L PG+  GGR+     +P
Sbjct: 1837 LCVLNIQSIKNG----KVATTTAAPQITPEE--EEKLAPGQCPGGRAPLGGSSP 1884


>Z99270-1|CAB16470.4|  500|Caenorhabditis elegans Hypothetical
           protein Y37A1A.3 protein.
          Length = 500

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 127 LCLFICFSMGTGVETSLGSVAMYRGARSSLYCATV 23
           L +F  F MG G+  S+G  AM+    S  YC  V
Sbjct: 134 LFIFARFLMGVGITISMGIAAMFVTESSPAYCRGV 168


>Z46241-10|CAH19082.1|  268|Caenorhabditis elegans Hypothetical
           protein C38D4.6b protein.
          Length = 268

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 22/60 (36%), Positives = 28/60 (46%)
 Frame = +3

Query: 192 SQAGDVKGKYGYXDDTGKLRVIEYGANKYGFQPAGEGITVAPPTLVDESTRDEGLRPGKS 371
           SQ GD  G YG+ D      + +  AN  G  PA E + V PP     S+ D G+ P  S
Sbjct: 61  SQMGDT-GFYGHPD-LYPFGLPQLAAN--GQIPAVEAVDVKPPLSNGSSSSDSGMYPSPS 116


>Z46241-9|CAA86322.2|  270|Caenorhabditis elegans Hypothetical
           protein C38D4.6a protein.
          Length = 270

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 22/60 (36%), Positives = 28/60 (46%)
 Frame = +3

Query: 192 SQAGDVKGKYGYXDDTGKLRVIEYGANKYGFQPAGEGITVAPPTLVDESTRDEGLRPGKS 371
           SQ GD  G YG+ D      + +  AN  G  PA E + V PP     S+ D G+ P  S
Sbjct: 61  SQMGDT-GFYGHPD-LYPFGLPQLAAN--GQIPAVEAVDVKPPLSNGSSSSDSGMYPSPS 116


>U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical
           protein R07E4.5 protein.
          Length = 817

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 367 SRREVDHSTEPRLHNQTMTTRNPRLHRPRDPV 462
           SRR   H T+P  H+Q M    P LH    PV
Sbjct: 760 SRRH--HYTQPHPHHQQMPHHQPHLHHAHHPV 789


>AL032648-5|CAA21698.1|  343|Caenorhabditis elegans Hypothetical
           protein Y54G9A.6 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
 Frame = +3

Query: 63  IATEPKEVSTPVPILKQINR---HNEDGSYTYGYEAADGSFKIETKSQAGDVKGKYGYXD 233
           I   P E   P P   QI++     E GS        DG+ ++    + GD+  K  +  
Sbjct: 9   IVAAPNEFRVPFPPFVQISKVQFQREAGSRLLAASGWDGTCRVYEVGKLGDISEKLVFTH 68

Query: 234 DTGKLRVIEYGANKYGFQPAGEGITVA 314
               L     G NK  F      + +A
Sbjct: 69  GKPLLTCTFAGYNKVAFGGVDHNVKLA 95


>Z19158-5|CAJ76965.1|  237|Caenorhabditis elegans Hypothetical
           protein T23G5.2b protein.
          Length = 237

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 117 NRHNEDGSYTYGYEAADGSFKIETKSQAGDVKGKYGYXDDTGKLRVIEYGAN 272
           +R N   + TY   A + ++    +S + DVK  +G      KL V +YGAN
Sbjct: 104 SRINVKENCTYYVHAENENWTCFEQSASLDVKNFFGLESAVEKLAVRQYGAN 155


>Z19158-4|CAJ76964.1|  719|Caenorhabditis elegans Hypothetical
           protein T23G5.2a protein.
          Length = 719

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 117 NRHNEDGSYTYGYEAADGSFKIETKSQAGDVKGKYGYXDDTGKLRVIEYGAN 272
           +R N   + TY   A + ++    +S + DVK  +G      KL V +YGAN
Sbjct: 104 SRINVKENCTYYVHAENENWTCFEQSASLDVKNFFGLESAVEKLAVRQYGAN 155


>U41992-5|AAA83356.1|  549|Caenorhabditis elegans Hypothetical
           protein F32E10.5 protein.
          Length = 549

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 21/67 (31%), Positives = 26/67 (38%)
 Frame = +3

Query: 51  APRYIATEPKEVSTPVPILKQINRHNEDGSYTYGYEAADGSFKIETKSQAGDVKGKYGYX 230
           APR      + V  P  I KQ+ R N      Y    AD  F  + + +  D    YG  
Sbjct: 249 APRRGQPSQEGVWIPREIAKQLERENGFERNDYDDSGADSDFLEDEEEE--DAGWDYGEG 306

Query: 231 DDTGKLR 251
           DD   LR
Sbjct: 307 DDYAYLR 313


>AF077534-2|AAC26284.1|  648|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform b protein.
          Length = 648

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 314 RNGDALAGWLESVFVGAVLN 255
           R GD L GW  S +V A++N
Sbjct: 571 RAGDGLGGWFPSSYVQAIIN 590


>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 218, isoform a protein.
          Length = 1136

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 314  RNGDALAGWLESVFVGAVLN 255
            R GD L GW  S +V A++N
Sbjct: 1059 RAGDGLGGWFPSSYVQAIIN 1078


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,105,149
Number of Sequences: 27780
Number of extensions: 235262
Number of successful extensions: 803
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)