Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332E11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    29   0.038
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.088
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    25   0.36 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    25   0.36 
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    24   0.82 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   0.82 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   4.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 28.7 bits (61), Expect = 0.038
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
 Frame = +3

Query: 126 NEDGSYTYGYEAADGSFKIET---KSQAGDV----KGKYGYXDDTGKLRVIEYGANKYGF 284
           N DG+Y   +E ++G    E+   K    +     +G   Y    G+   I Y A++ GF
Sbjct: 37  NFDGNYINNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPDGQQVSITYVADENGF 96

Query: 285 QPAGEGITVAPP 320
           Q  G  I  APP
Sbjct: 97  QVQGSHIPTAPP 108


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.5 bits (58), Expect = 0.088
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 90  WRPL*AQWLCIEGRGPHCTVPP 25
           W+PL   + C++G+ PH   PP
Sbjct: 421 WKPLDKCYFCLDGKLPHDDQPP 442


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 24  TVAQYNEDRAPRYIATEPKEVSTPVPILKQINRHNEDGSYTYGY 155
           T  + ++DR  R  + EPK +S+     K  N +N + +Y   Y
Sbjct: 62  TSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNY 105


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 24  TVAQYNEDRAPRYIATEPKEVSTPVPILKQINRHNEDGSYTYGY 155
           T  + ++DR  R  + EPK +S+     K  N +N + +Y   Y
Sbjct: 62  TSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNY 105


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = -3

Query: 291 LAGIRICWRR--TQSLVACQCRXCIH 220
           + G  +CW    T  LV   CR CIH
Sbjct: 15  VGGFILCWLPFFTMYLVRAFCRNCIH 40


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = -3

Query: 291 LAGIRICWRR--TQSLVACQCRXCIH 220
           + G  +CW    T  LV   CR CIH
Sbjct: 463 VGGFILCWLPFFTMYLVRAFCRNCIH 488


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 397 PRLHNQTMTTRNPRLHRPRDPVP 465
           P L N TM    PR  + + P+P
Sbjct: 15  PDLDNVTMPETTPRRKKNKKPLP 37


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = +3

Query: 24   TVAQYNEDRAPRYIATEPKEVSTPVPILKQINRHNEDGS 140
            T    N D+    + T+ KE    +   KQ+N     G+
Sbjct: 992  TQTSANNDKDTNAVVTQSKEARDNITATKQLNNKARIGN 1030


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -2

Query: 295 PAGWNPYLLAPYSITRSLPVSSLYP 221
           P   NPY+  P S   +     +YP
Sbjct: 822 PPQQNPYMFLPVSYMSTTMAGVIYP 846


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,337
Number of Sequences: 438
Number of extensions: 3450
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)