Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332E09f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2... 28 0.97
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 0.97
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 27 1.3
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 27 1.7
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.2
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 26 3.9
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 26 3.9
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|... 25 5.2
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 5.2
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.8
SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 6.8
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 25 9.0
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 25 9.0
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 25 9.0
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 9.0
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 9.0
>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 27.9 bits (59), Expect = 0.97
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 510 LIKILKRYCSLSIVNAVFIFFCECIYF 430
L I++ YC+ I N F C+C Y+
Sbjct: 62 LSAIVRFYCAYHITNPDVYFLCQCTYY 88
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.9 bits (59), Expect = 0.97
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +1
Query: 241 SDVNEMNKQNIIWTKNSTIMLLN-LYETKIHMLDNP-KKKSKMWISIAEELKSLN--VEV 408
+++ + N Q T+ ++N +E H++++ + + S+ EL LN VEV
Sbjct: 962 AELEKSNIQQKYLASEKTLEMMNETHEQFKHLVESEISTREEKITSLRSELLDLNKRVEV 1021
Query: 409 TADQVRWKINALTKKYKDCIDNGQGAVSFK 498
++ L K+ +D + A+SFK
Sbjct: 1022 LKEEKESSSKELAKQLEDAVREKDSALSFK 1051
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 338 SNICILVSYKFSNIIVEFFVQMIFCLFISFTS 243
+N+ + SYK I+ + M FCLF+S ++
Sbjct: 515 NNLLFMNSYKMKLSIILGVIHMTFCLFLSLSN 546
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 205 YNHNQNISQQEESDVNEMNKQNI 273
YN + ++ EES+V+ NKQN+
Sbjct: 495 YNSSTSLDSSEESEVDVENKQNV 517
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 154 ILDSQPNLYKPNMPVPTYNHNQNISQQEESDVNEM 258
+L S PN Y P +P P +H+ ++ E+S ++ +
Sbjct: 220 LLKSYPNAYVPRLP-PKDDHDTYLNSSEDSTLSPL 253
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.8 bits (54), Expect = 3.9
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -3
Query: 249 YIRFFLLANVLIVIVCWNWHIWFVQIRLTIE 157
Y+ FF ++ + + W++W ++ LT+E
Sbjct: 247 YVGFFTFLSIGLSVCLELWYLWDIKTGLTVE 277
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 198 NWHIWFVQIRLTIENS*DRYIVMNVFIHFDLDINLIRPF 82
N H+ F + I R + MNV I FD N I+PF
Sbjct: 235 NTHVRFPTLTANIRQRRGRKVAMNVPIFFDK--NTIKPF 271
>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 5.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 265 QNIIWTKNSTIMLLNLY 315
QN++WT STI ++ L+
Sbjct: 297 QNLVWTNQSTIPMMTLH 313
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 109 IKMDENIHNNVAVLAILDSQPNLYKPNMP 195
+K ++NIH+N LAI ++ + +K + P
Sbjct: 22 LKFNKNIHSNPDFLAIAENWKSYWKSHYP 50
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 359 FDFFLGLSNICILVSYKFSNIIVEFFVQMIFCLFISF 249
F F LS I I+ F + FF + C+F+SF
Sbjct: 133 FSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSF 169
>SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 90
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 462 VFIFFCECIYF 430
+F FFC CIYF
Sbjct: 42 LFAFFCPCIYF 52
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +1
Query: 154 ILDSQPN--LYKPNMPVPTYNHNQNISQQEESDVNEMNKQNIIWTKNSTIMLLNLYETKI 327
IL+ + N ++ NM YN ++ + + + + + QN+ KN + L +T
Sbjct: 221 ILEGKVNELTHQLNMADSKYNESKVANNSQNNQIKTLKAQNLNIHKNFQKIQSELIQTNS 280
Query: 328 HMLDNPKKKSKMWISIAEELK 390
+ K+ S + + A L+
Sbjct: 281 GLYSTKKELSALQVRYATLLR 301
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 358 KMWISIAEELKSLNVEVTADQVRWKINALTKKYK 459
K I++ E S N++ TAD +R ++ +YK
Sbjct: 516 KCLINVLEYTMSKNLQHTADSIRTELEECNYQYK 549
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 249 YIRFFLLANVLIVIVCWNW 193
+I FFLL + V V W W
Sbjct: 672 FITFFLLFAFIFVAVIWTW 690
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/39 (23%), Positives = 18/39 (46%)
Frame = +1
Query: 109 IKMDENIHNNVAVLAILDSQPNLYKPNMPVPTYNHNQNI 225
+ + N+H V V + D+ + PN P+ ++ I
Sbjct: 883 VDLAANVHGRVDVSEVFDNFGEIVDPNKPLKRFHKGDKI 921
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 3 NGQNKIPYKRTANN 44
N QN+IPY +ANN
Sbjct: 31 NTQNRIPYNTSANN 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,772
Number of Sequences: 5004
Number of extensions: 43425
Number of successful extensions: 160
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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