Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332E09f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0256 + 21887666-21888670 30 1.3
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 29 1.7
07_01_1207 + 11511754-11513865 29 2.3
05_04_0209 - 19073147-19074041,19074117-19074163,19074258-190744... 29 3.0
04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733 29 3.0
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962... 28 5.2
03_05_1143 + 30709825-30709926,30710105-30710260,30710356-307104... 27 6.9
01_02_0079 + 10909570-10909745,10910670-10910732,10911489-109120... 27 9.1
>09_06_0256 + 21887666-21888670
Length = 334
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 277 WTKNSTIMLLNLYETKIHMLDNPKKKSKMWISIAEELKS 393
W+++ + LL YE K + + K K W+ IA E+ +
Sbjct: 26 WSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVSA 64
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Frame = +1
Query: 214 NQNISQQEESDVNEMN--KQNIIWTKNSTIMLLNLYETKIHMLDNPKK--KSKMWISIAE 381
+++I +Q++S ++ + KQ+ + +KNS + L +L + + P K W+S+
Sbjct: 3141 SESIPKQQQSSLSRQSTLKQSSVPSKNSVLRLADLEKKDMLSYCCPPVGIKQNFWLSVGI 3200
Query: 382 ELKSLNVEVTADQVRWKI 435
+ L+ ++ WKI
Sbjct: 3201 DASILHTDLNMPIYDWKI 3218
>07_01_1207 + 11511754-11513865
Length = 703
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 364 WISIAEELKSLNVEVTADQVRWKINALTKKYKDCID 471
W+ + +E+ L V + DQV NAL Y C D
Sbjct: 324 WLRLGKEIHGLAVRMCCDQVESVSNALITMYARCKD 359
>05_04_0209 -
19073147-19074041,19074117-19074163,19074258-19074437,
19074839-19074955,19075105-19075227,19075391-19075776,
19076177-19076303,19077140-19077202,19078035-19078086,
19078189-19080023
Length = 1274
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +1
Query: 337 DNPKKKSKMWISIAEELKSLNVEVTADQVRWKINALTKKYKDCIDNGQGAV 489
D + + +W+ AE L++ E T + VRW + +Y + + G V
Sbjct: 105 DQYDRVAAVWLDGAELLRTTTAEPTPEGVRWTVRKDVTRYSALLRSPPGGV 155
>04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733
Length = 760
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = +1
Query: 277 WTKNSTIMLLNLYETKIHMLDNPKKKSKMWISIAEELKSLNVEVTADQVRWKINALTKKY 456
W + T+ L+ + + K +W ++ +L L + +A + + K + K Y
Sbjct: 100 WPREETLALIRIRSEMDATFRDATLKGPLWEEVSRKLAELGYKRSAKKCKEKFENVHKYY 159
Query: 457 KDCIDNGQG---AVSFKYFNEM 513
K + G S+++F E+
Sbjct: 160 KRTKEGRAGRQDGKSYRFFTEL 181
>06_03_0138 +
17093196-17093325,17095704-17095804,17096224-17096292,
17096403-17097650,17097763-17097871,17099459-17099655,
17099732-17099842,17099927-17100079
Length = 705
Score = 27.9 bits (59), Expect = 5.2
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Frame = +1
Query: 133 NNVAVLAILDS---QPNLYKP-NMPVPTYNHNQ-----NISQQEES---DVNEMNKQNII 276
NN V LDS + KP N+PVPTY + NI+ + V + ++
Sbjct: 352 NNKPVSLPLDSTVPSASSNKPMNIPVPTYLPSSQPPLANIAASAATVAEPVTLVTPGQLL 411
Query: 277 WTKNSTIMLLNLYETKIHMLDNPKKKSKMWISIAEELKSLNVEVTADQV 423
T +ST++ + ET M+ +PK S M +S ++ + + +VT+ V
Sbjct: 412 PTISSTVLSADALETASAMIPSPKAASSM-VSSSQAALAASSQVTSSVV 459
>03_05_1143 + 30709825-30709926,30710105-30710260,30710356-30710439,
30710769-30710882,30711019-30711111,30711888-30711977,
30712157-30712227,30712300-30712374,30712481-30712568,
30712748-30712806,30712893-30712956,30713030-30713095,
30713283-30713435,30713522-30713626,30713739-30713974,
30714104-30714173,30714286-30714339,30714501-30714557,
30714662-30714741,30716056-30717919
Length = 1226
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +1
Query: 301 LLNLYETKIHMLDNPKKKSKMWISIAEELKSLNVEVTADQVRWKINALTKKYKDC 465
LL E + +L KK + I + +E+KS+N D + KI +L + ++C
Sbjct: 1046 LLRSEEERTKLLSELKKSREQLIMVQKEIKSMN---RHDDIDCKIASLESEVENC 1097
>01_02_0079 +
10909570-10909745,10910670-10910732,10911489-10912020,
10912112-10912477
Length = 378
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 234 LLANVLIVIVCWNWHIWFV 178
+L +VLI++ C W +WF+
Sbjct: 184 VLGDVLIILSCAAWAVWFI 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,987,384
Number of Sequences: 37544
Number of extensions: 216944
Number of successful extensions: 525
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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