Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332E09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical pr...    32   0.22 
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo...    32   0.22 
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo...    32   0.22 
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo...    32   0.22 
Z78417-10|CAB01688.2|  745|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z81583-2|CAB04670.1|  314|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z81483-3|CAB03961.1|  152|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL021492-3|CAA16382.3|  893|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z74032-8|CAA98462.3|  325|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U29378-4|AAA68727.2|  667|Caenorhabditis elegans Temporarily ass...    28   4.7  
Z81562-5|CAB04555.1|  408|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF026215-2|AAB71324.2|  533|Caenorhabditis elegans Udp-glucurono...    27   8.1  

>U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical
           protein F48C1.1 protein.
          Length = 1064

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
 Frame = +1

Query: 193 PVPTYNHNQNISQQEESDVNEMNKQNIIWTKNSTIMLLNLYETKIHMLDNPKKKSKMWIS 372
           P P    N N++ + E  VN++ K + ++ K   I++++  + +  M++   ++   +I 
Sbjct: 353 PKPEKITNANVAAKAEKLVNQLEKMSEMY-KAPVILMMHGDDFRFDMIEEWNQQHDNFIP 411

Query: 373 IAEEL-KSLNVEVTADQVRWKINALTKKYKDCIDNGQGAVSFKYFNEM 513
           + +E+ K   VE+         N L K Y +  D+    VS  +F  M
Sbjct: 412 VFDEINKGSRVEIRFGTFTDYFNDLEKWYSNNKDSEPPTVSGDFFPYM 459


>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-5 protein.
          Length = 2238

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +1

Query: 286 NSTIMLLNLYETKIHMLDNPKKKSKMWISIAEELKSLNVEVTADQVRWKINALTKKYKDC 465
           N  +ML NL   K+    N  +K     +   E+ +L ++V  DQV WK   LTK   D 
Sbjct: 740 NGNLMLFNLMLDKVANKRNLFEKWANHQNFLHEILALPMKVYGDQVLWKGETLTKPAYDV 799

Query: 466 I 468
           +
Sbjct: 800 L 800


>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
           metabolism enzymeprotein 5, isoform a protein.
          Length = 2276

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +1

Query: 286 NSTIMLLNLYETKIHMLDNPKKKSKMWISIAEELKSLNVEVTADQVRWKINALTKKYKDC 465
           N  +ML NL   K+    N  +K     +   E+ +L ++V  DQV WK   LTK   D 
Sbjct: 740 NGNLMLFNLMLDKVANKRNLFEKWANHQNFLHEILALPMKVYGDQVLWKGETLTKPAYDV 799

Query: 466 I 468
           +
Sbjct: 800 L 800


>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
           metabolism enzymeprotein 5, isoform b protein.
          Length = 2238

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +1

Query: 286 NSTIMLLNLYETKIHMLDNPKKKSKMWISIAEELKSLNVEVTADQVRWKINALTKKYKDC 465
           N  +ML NL   K+    N  +K     +   E+ +L ++V  DQV WK   LTK   D 
Sbjct: 740 NGNLMLFNLMLDKVANKRNLFEKWANHQNFLHEILALPMKVYGDQVLWKGETLTKPAYDV 799

Query: 466 I 468
           +
Sbjct: 800 L 800


>Z78417-10|CAB01688.2|  745|Caenorhabditis elegans Hypothetical
           protein C35C5.2 protein.
          Length = 745

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +1

Query: 256 MNKQNIIWTKNSTIMLLNLYETKIHMLDNPKKKSKMWISIAEELKSLNVEVTADQVRWKI 435
           M    ++    ST+ L  +    IH       K    +SIA  +K L   +  D +R  +
Sbjct: 1   MKASGVVLVAVSTVALTIILSNAIHQSYKSNSKPLPKLSIATNIKQL---INVDNIRSNL 57

Query: 436 NALTKK 453
           ++LTKK
Sbjct: 58  HSLTKK 63


>Z81583-2|CAB04670.1|  314|Caenorhabditis elegans Hypothetical
           protein T02G6.2 protein.
          Length = 314

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +1

Query: 226 SQQEESDVNEMN---KQNIIWTKNSTIMLLNLYETKIHMLDNPKKK 354
           S QE++DVNE+    +  I + K + + + NLY  ++     PKKK
Sbjct: 268 SLQEQADVNEVLEIIRNQIFYLKYNFLKISNLYSQQMRSNAEPKKK 313


>Z81483-3|CAB03961.1|  152|Caenorhabditis elegans Hypothetical
           protein C43D7.5 protein.
          Length = 152

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 121 ENIHNNVAVLAILDSQPNLYKPNMPVPTYNHNQNISQQEESDVNEMNKQN 270
           +N  N       +D + N         T N N N + QEE DVN M ++N
Sbjct: 17  DNCDNTNTYSHTVDRKDNFDNTTTNTKTVNRNDNCNNQEEGDVN-MYRRN 65


>Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical protein
            F36G3.1 protein.
          Length = 964

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +1

Query: 166  QPNLYK-PNMPVPTY-NHNQNISQQEESDVNEMNKQNIIWTKNSTIMLLNLYETKIHMLD 339
            +  LYK  NM    + +    +S + E    E+NKQ +I  + S   L + ++ K+  L+
Sbjct: 794  EATLYKMKNMERDRFLSREAQMSMEIEDLQRELNKQKLILNQTSMAKLADTFDRKVLHLE 853

Query: 340  NPKKKSKMWI 369
            N  ++  M I
Sbjct: 854  NELRERDMLI 863


>AL021492-3|CAA16382.3|  893|Caenorhabditis elegans Hypothetical
           protein Y45F10D.7 protein.
          Length = 893

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = +1

Query: 217 QNISQQEESDVNEM-NKQNIIWTKNSTIMLLNLYETKIHMLDNPKKKSKMWISIAE-ELK 390
           +NI  + + D   + +K+N++  ++S   LL   +T+ H+LD  K    M +S  + +++
Sbjct: 742 ENIGDEMDGDSRYITSKRNLLELESSFTTLLRNAKTRDHLLDAFKTLQNMSLSAIDFQIR 801

Query: 391 SLNVEVTADQVRWKINALTKK 453
           +LN +      R  +  L  K
Sbjct: 802 TLNPKTIPIFFRMLLEVLKTK 822


>Z74032-8|CAA98462.3|  325|Caenorhabditis elegans Hypothetical
           protein F35B12.1 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 362 IFDFFLGLSNICILVSYKFSNIIVEFFVQMIFCLFISFTSDSSCW 228
           IFDF +      ++  Y+F  II+EFF  +    ++ +TS    W
Sbjct: 126 IFDFKITFLITLLMFIYRFVKIILEFFHYIPLECWMVYTSYDLAW 170


>U29378-4|AAA68727.2|  667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 197 protein.
          Length = 667

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 283 KNSTIMLLNLYETKIHMLDNPKKKSKMWISIAEELKSLNVE 405
           KN  + L+N Y+  + ++DN + K     +I  EL+  +++
Sbjct: 502 KNKHVFLINNYDLILSIIDNEESKHTKIYAIVHELEQKSID 542


>Z81562-5|CAB04555.1|  408|Caenorhabditis elegans Hypothetical
           protein K03D7.8 protein.
          Length = 408

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 22/73 (30%), Positives = 37/73 (50%)
 Frame = -1

Query: 521 IWCISLKYLKDTAPCPLSMQSLYFFVSAFIFHLT*SAVTSTFNDFNSSAIDIHIFDFFLG 342
           ++ ISL Y+K+ A   L++ +   F+S FI++    +  S++     S  D  IF+    
Sbjct: 27  VYEISLLYIKEMALLVLNVLNNITFISLFIYNRRRKSQPSSYR----SEFDTLIFNQMYY 82

Query: 341 LSNICILVSYKFS 303
           +S  C LV Y  S
Sbjct: 83  VSG-CSLVFYDIS 94


>AF026215-2|AAB71324.2|  533|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein36 protein.
          Length = 533

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 299 IIVEFFVQMIFCLFISFTSDSSCWLMF 219
           I VE  ++++FCLF +  SDS  +L+F
Sbjct: 2   INVETNMKLLFCLFFALCSDSYNFLVF 28


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,452,411
Number of Sequences: 27780
Number of extensions: 235006
Number of successful extensions: 786
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)