Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332E07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 231 4e-62
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 231 5e-62
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 29 0.42
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 29 0.42
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 29 0.42
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 29 0.42
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 28 0.73
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 26 3.0
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 26 3.0
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.9
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 5.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 5.2
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 6.8
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 231 bits (566), Expect = 4e-62
Identities = 105/159 (66%), Positives = 127/159 (79%)
Frame = +3
Query: 3 LCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAG 182
LC+HLVS+EYEQ++SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAG
Sbjct: 48 LCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAG 107
Query: 183 ADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYV 362
ADRLQTGMR AFGKP G VARV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I V
Sbjct: 108 ADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIV 167
Query: 363 SKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 479
SKKWGF++Y RDE+ + R G + DGC ++ + G L
Sbjct: 168 SKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 231 bits (565), Expect = 5e-62
Identities = 105/159 (66%), Positives = 127/159 (79%)
Frame = +3
Query: 3 LCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAG 182
LC+HLVS+EYEQ++SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAG
Sbjct: 48 LCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAG 107
Query: 183 ADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYV 362
ADRLQTGMR AFGKP G VARV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I V
Sbjct: 108 ADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIV 167
Query: 363 SKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 479
SKKWGF++Y RDE+ + R G + DGC ++ + G L
Sbjct: 168 SKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.42
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 434 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 300
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.42
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 434 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 300
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 29.1 bits (62), Expect = 0.42
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 434 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 300
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 235 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 279
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.42
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 434 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 300
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 28.3 bits (60), Expect = 0.73
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Frame = +3
Query: 132 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 299
L P R+ C G GK +G AR+ IG+ + + K
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158
Query: 300 QVIEALRRAKFKFPGRQKIYVSK 368
AL++A F PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 274 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 432
C L+T C + + SP+++RS Y +G++ S + + RAA+
Sbjct: 17 CLLITLSIILLGWQCVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = +1
Query: 274 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASLMTAALC 453
C + T R S RLC D++ +Y S + NV+++ C K L + +
Sbjct: 160 CLIATAYRSSSIRLC--------DMQSGSYTHSLSGHTGNVLAVDWCPKNEFVLASGSAD 211
Query: 454 STARNMDLSTLGGRF 498
T R D+ + F
Sbjct: 212 GTCRLWDIRKVSSSF 226
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 236 STLRLAKRTTHPSLEPISSS 177
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 304 SSRLCAVPSSSSPDVKRSTYQRSGVS 381
SS + P+S SPD+K YQ G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 105 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 209
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.0 bits (52), Expect = 6.8
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 241 HVFALDSPSC--PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRS 411
H+ +LDS S P AL + + VPS SSP VK ++ G S S SLRS
Sbjct: 422 HIPSLDSSSLLTPLALPNKKAFQPVKF-RVPSFSSPLVKPASSSSFGRSHSHLGTSLRS 479
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,487
Number of Sequences: 5004
Number of extensions: 47242
Number of successful extensions: 157
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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