Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332E06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271... 69 2e-12
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873... 35 0.046
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094... 33 0.18
01_05_0297 - 20578031-20578080,20578162-20578236,20578317-205784... 30 0.98
05_05_0121 + 22525782-22525998,22526526-22526609,22526797-225268... 29 2.3
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 29 2.3
01_06_1275 - 35910992-35911342,35912157-35912390,35912573-359126... 29 2.3
08_02_0067 - 11863092-11863104,11863432-11863547,11863610-118639... 28 4.0
05_03_0115 - 8544590-8544958,8545408-8545503,8561954-8562505,857... 28 4.0
07_01_0442 - 3348638-3349126,3349978-3350322 27 6.9
01_06_1727 + 39477107-39477395,39477493-39477722 27 6.9
01_06_1230 + 35575840-35576020,35576122-35576170,35576365-355764... 27 6.9
>01_01_0335 -
2706916-2706984,2707062-2707825,2710014-2710053,
2710105-2710173,2710268-2710336
Length = 336
Score = 68.9 bits (161), Expect = 2e-12
Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 12/143 (8%)
Frame = +2
Query: 128 GKIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAK-GKTLKDEDTLNSLNIQD---- 292
G + G++ + ++++ I KK YP RQ L L + GK+ K ++ +
Sbjct: 39 GGLRSRGKAKVADLQDAIYAKTKK-YYPARQRLTLPIQPGKSGKPVVLSAKASLSEYCEK 97
Query: 293 --GS-KLFLKDLGPQVSWRNVFLAEYAGPLFVYLWVYQRPWILY----GTQTSSPEQVAT 451
GS + KDLGPQV + +F EY GPL +Y Y P Y G + P V T
Sbjct: 98 GSGSLTVVFKDLGPQVFYSTLFFFEYLGPLLIYPMFYYLPVYKYFGYEGERVMHP--VQT 155
Query: 452 VAAICWSAHYAKRLFETLFIHRF 520
A W HY KR+ ET F+HRF
Sbjct: 156 YAMYYWCFHYFKRIMETFFVHRF 178
>06_01_1069 +
8731567-8731632,8732120-8732281,8733028-8733081,
8733557-8733630,8733706-8733786,8734902-8735079,
8735336-8735506,8736113-8736202,8736284-8736331,
8736447-8736562,8736655-8736733,8737101-8737223
Length = 413
Score = 34.7 bits (76), Expect = 0.046
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +2
Query: 131 KIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL 310
+I + E+S+ VK I+ + +++YP Q + + +GK LKD+ TL + + S L +
Sbjct: 14 EIEASPEASVAEVKRIIESTQGQNVYPADQQMLIH-QGKILKDDTTLEGNKVAENSFLVI 72
>09_04_0070 +
14308446-14308511,14308844-14309005,14309420-14309473,
14310009-14310073,14310391-14310459,14310590-14310767,
14311085-14311231,14311316-14311432,14311507-14311619,
14311703-14311781,14311892-14312020
Length = 392
Score = 32.7 bits (71), Expect = 0.18
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +2
Query: 131 KIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL 310
+I V + +VK I+ + + +YP Q + + +GK LKD+ TL+ + + S L +
Sbjct: 14 QIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIH-QGKVLKDDTTLDENKVLENSFLVI 72
>01_05_0297 -
20578031-20578080,20578162-20578236,20578317-20578416,
20578476-20578535,20578833-20578907,20578989-20579069,
20579596-20579665,20579769-20579833,20580008-20580116,
20580812-20580876,20580964-20581023,20582008-20582134,
20582215-20582315,20583209-20583316,20583429-20583464,
20583569-20583714,20585555-20585564
Length = 445
Score = 30.3 bits (65), Expect = 0.98
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 209 PDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFLKDLGPQVSWRNVFLAEYAGPLFV 379
P+RQ K+ KG LKD+ ++L ++DG KL + + + A GP+FV
Sbjct: 39 PERQ--KIMVKGGILKDDADWSTLGVKDGQKLMMIGTADE-----IVKAPEKGPVFV 88
>05_05_0121 +
22525782-22525998,22526526-22526609,22526797-22526820,
22527118-22527233,22527691-22527936,22528176-22528256,
22528666-22528782,22529139-22529492
Length = 412
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 422 QTSSPEQVATVAAICWSAHYAKRLFETLFIHRF 520
Q++SPE + + +CW+ H A R +T+ + F
Sbjct: 318 QSASPEYLQKLTYLCWNHHKAVRHIDTVRAYTF 350
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 422 VYHIKSTVFDTPTSKQRVVQHIQLKTHSAKILEVQDLLKKAWIRL 288
V HIK TV P+ QRV H + K +E + KAW+ L
Sbjct: 264 VAHIKFTVLLLPSGSQRVTSHSLQELQPTKSIE-DNAEIKAWLAL 307
>01_06_1275 -
35910992-35911342,35912157-35912390,35912573-35912653,
35913162-35913407,35913502-35913617,35914813-35915032
Length = 415
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 422 QTSSPEQVATVAAICWSAHYAKRLFETLFIHRF 520
Q++SPE + + +CW+ H A R +T+ + F
Sbjct: 322 QSASPEYLQKLTYLCWNHHKAVRHIDTVRAYTF 354
>08_02_0067 -
11863092-11863104,11863432-11863547,11863610-11863950,
11864978-11865331,11866055-11866150,11866812-11866980,
11867541-11867618,11867745-11867926,11868010-11868094,
11868545-11868648,11869510-11869590,11870123-11870240,
11871299-11871430,11871635-11871788,11871838-11871917
Length = 700
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/75 (26%), Positives = 41/75 (54%)
Frame = +2
Query: 86 MEIEILSVSSAKPLGKIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDED 265
+EI+I ++ S + V + +KEKI + + ++Q +L +G+ LKD++
Sbjct: 103 IEIKIKTLDSQTY--NLRVNKRVPVPLLKEKI--ATVTGILSEQQ--RLICRGRVLKDDE 156
Query: 266 TLNSLNIQDGSKLFL 310
L++ +++DG L L
Sbjct: 157 LLSAYHVEDGHTLHL 171
>05_03_0115 -
8544590-8544958,8545408-8545503,8561954-8562505,
8576247-8576312,8576623-8576694,8576967-8577082,
8577743-8577838,8578498-8578765
Length = 544
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 194 KKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL 310
K+ + PD+Q +L GK LKD TL NIQ S L L
Sbjct: 424 KEGIPPDQQ--RLIFAGKQLKDGRTLADYNIQKESTLHL 460
>07_01_0442 - 3348638-3349126,3349978-3350322
Length = 277
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 446 ATVAAICWSAHYAKRLFETLFIHRF 520
A V + + H+ KR+ E LFIH++
Sbjct: 98 AQVLSAALTVHFLKRILEVLFIHQY 122
>01_06_1727 + 39477107-39477395,39477493-39477722
Length = 172
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 176 KIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFLKDLGPQVSWRNV 346
K+ S+ L+P Q +L KGK D D L+ + +QD K+ L + P V R +
Sbjct: 100 KVMLSLVTGLWPRDQ--RLLYKGKERDDGDHLHMVGVQDKDKVLLLE-DPAVKERKL 153
>01_06_1230 +
35575840-35576020,35576122-35576170,35576365-35576441,
35576883-35577145,35577241-35577387,35578569-35578766
Length = 304
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 209 PDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL 310
P+RQ +L +GK D + L++ ++DG+KL L
Sbjct: 117 PERQ--RLFFRGKEKSDNEFLHTAGVKDGAKLLL 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,731,372
Number of Sequences: 37544
Number of extensions: 242491
Number of successful extensions: 583
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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