Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332E05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   2.2  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   2.2  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   2.2  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   6.8  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    25   6.8  

>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 193 YSQYIHNKFNNYTQIIFSQDKTTI*RWHETNLHI 92
           YS  +  K NN+T  IF+ D   +    E NLH+
Sbjct: 253 YSPVVFQKQNNHTNTIFTFDVPQVSGSCELNLHL 286


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
 Frame = -3

Query: 288  YAHLSVNSYSICQDVVCCNSLLLNKNEILI-----YSILSIYTTN 169
            ++++ V++  +CQDVV   + +L+K  + +     YS+LS +  N
Sbjct: 941  FSYIYVSTERMCQDVVISTTSILHKTIVNLDTIKGYSVLSFFREN 985


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -1

Query: 290 STHIFRSIL-TVFAKT*FVAIHYY*TKMRFLSTVFSV 183
           +++I R+I  T F K+ F  ++Y    + F+STVFS+
Sbjct: 57  NSNISRNISNTFFKKSIFFFVYYCKQALEFISTVFSI 93


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 193 YSQYIHNKFNNYTQIIFSQDKTTI*RWHETNLHI 92
           YS  +  K NN+T  IF+ D   +    E NLH+
Sbjct: 253 YSPVVFQKQNNHTNTIFTFDVPQVSGSCELNLHL 286


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 193 YSQYIHNKFNNYTQIIFSQDKTTI*RWHETNLHI 92
           YS  +  K NN+T  IF+ D   +    E N H+
Sbjct: 333 YSPVVFQKQNNHTNTIFTFDVPQVSGSCELNFHL 366


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 103 NLHIHNIMEVIEKHQFEFVDETIR 32
           N H H +ME IEK  F ++ +TIR
Sbjct: 354 NEHYHEVMEFIEK-LFLYIFKTIR 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,375
Number of Sequences: 5004
Number of extensions: 39844
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)