Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332E05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1820 + 40120861-40120863,40122484-40122612,40122710-401228...    29   3.0  
03_01_0274 - 2114076-2115506,2117897-2118114,2118251-2118371           27   9.1  

>01_06_1820 +
           40120861-40120863,40122484-40122612,40122710-40122895,
           40123679-40123867,40124229-40124563,40124977-40125400
          Length = 421

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 278 RCAYYGQRN*LVYKWILNLKCGY 346
           RCA++  +N L+Y W L+ K GY
Sbjct: 318 RCAWHMIQNDLIYAWGLDFKLGY 340


>03_01_0274 - 2114076-2115506,2117897-2118114,2118251-2118371
          Length = 589

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 416 YFYIFLVLVSAINCFVFIKISETLNF 493
           Y+Y FL ++ AIN  VF+ +S    +
Sbjct: 540 YYYGFLTVLGAINAVVFVALSSRYRY 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,152,674
Number of Sequences: 37544
Number of extensions: 189423
Number of successful extensions: 286
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)