Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332E02f
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    28   0.83 
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    28   0.83 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   3.3  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   4.4  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   5.8  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   5.8  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   7.7  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -2

Query: 211 RNHRV*LRSGKRNRLRDASQCICDVVPICRGRCVEMGTRSAMQASAGVG 65
           ++H +  R GKR+     S C C   P  + R    G ++  + + G G
Sbjct: 14  KSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTG 62


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -2

Query: 211 RNHRV*LRSGKRNRLRDASQCICDVVPICRGRCVEMGTRSAMQASAGVG 65
           ++H +  R GKR+     S C C   P  + R    G ++  + + G G
Sbjct: 14  KSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTG 62


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +2

Query: 35   RLATQCTRCLADARASLHGRPCAHLHAPTPTDRNDIAYTLTG-----IPQTIPFSRPKSN 199
            RL T+ TR   D R +   RP A    P P   ++I  + T       P + P S+P S 
Sbjct: 943  RLPTKLTRPSNDGRKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVST 1002

Query: 200  S 202
            S
Sbjct: 1003 S 1003


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 94  TVCPSPRTDPDRSE-RHRIYTDWHPSNDSVFPTEV 195
           T C      P+  + +H ++ D H +N  +FP EV
Sbjct: 714 TNCEMSYVSPNLGKLKHLVHLDLHANNIKIFPEEV 748


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +2

Query: 161 IPQTIPFSRPKS 196
           IP+T+PFS PKS
Sbjct: 229 IPETLPFSAPKS 240


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 355 LSTTLAMHNEELRFYKQTKNNNKKIAPLKNVNREGYSETHVHGMFTK 215
           LST  ++  E L  YK+    N  +  LK +++   SET     F++
Sbjct: 834 LSTLKSLAKEFLSNYKEENLENSTLVQLKQLSKHLLSETKQDESFSE 880


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 161 IPQTIPFSRPKSNSMVPKFRKHSMH-VSFAISF 256
           +  ++    P +++  PKFR H  H V+  +SF
Sbjct: 143 VETSLTMKTPPAHASTPKFRSHKSHRVAVPMSF 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,860,470
Number of Sequences: 5004
Number of extensions: 36154
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)