Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332E01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   1.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   5.8  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = -2

Query: 472 TINLCD--LSRFXISSDECYAIWI 407
           T+  CD   S F I  DEC  +WI
Sbjct: 238 TVGNCDGLTSVFRIQVDECDRLWI 261


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 142 FQLFDXTIEIARIRHVKTLGHVTMSIS 62
           + LFD   E  R+  V+T+G   M +S
Sbjct: 453 YSLFDTLTERNRVYKVETIGDAYMVVS 479


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 499 YFLRHSSVETINLCDLSRFXISSDE 425
           YF ++ S E     DLS    SSDE
Sbjct: 299 YFTKYGSGECYFSSDLSESETSSDE 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,678
Number of Sequences: 438
Number of extensions: 2197
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)