Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332D12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    26   3.9  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    26   3.9  
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.2  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   5.2  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   5.2  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    25   5.2  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   5.2  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   6.8  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    25   6.8  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   9.0  
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.0  

>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +3

Query: 285 KCQQLRKKLKV-QILVAPMMSHQNRHLSPTKQLKNLTLHQLRNKNHQMTATVMMMLRQNL 461
           K  +L++++++ +        H +  LSP++ ++++     RNK+  + AT    LRQ L
Sbjct: 72  KSDELKQEIRIAKSFERRRCGHIDEALSPSECIQSVVNINGRNKHRYVVATQDPELRQAL 131

Query: 462 KS 467
           +S
Sbjct: 132 RS 133


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 2/107 (1%)
 Frame = +3

Query: 186 LPSLIKQIKQKLKVPVTRAKKMPLRNQQFKQMGKCQQLRKKLKVQI--LVAPMMSHQNRH 359
           L + I  +KQ  K   + + +  L NQQ +Q+     L KKL  ++  +          H
Sbjct: 253 LQAEIAVLKQNTKEQKSGSSQDDLSNQQKQQLDFMDSLNKKLSTELESIKEASRKEMETH 312

Query: 360 LSPTKQLKNLTLHQLRNKNHQMTATVMMMLRQNLKSSLLNQ*KQIQY 500
            +  + L+N      + K   +T          +K   L+  KQI++
Sbjct: 313 CATIQTLENEVKEARKVKEESLTLANKFSDYDEIKRE-LSVLKQIEF 358


>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = +3

Query: 201 KQIKQKLKVPVTRAKKMPLRNQQFK-QMGKCQQLRKKLKVQI----LVAPMMSHQNRHLS 365
           K  K  L  P+T AKKM   N+Q     G  +   +   V++    LV    + +N+ +S
Sbjct: 283 KLAKANLAEPITEAKKMNKENKQENVGAGDDEDASESPMVRVTHLLLVIQAFTIKNKEVS 342

Query: 366 PTKQLKNLTLHQLRNKNHQM 425
             +QL  L +H L + NH +
Sbjct: 343 DDEQLCFL-IH-LNDTNHNL 360


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 351 NRHLSPTKQLKNLTLHQLRNKNHQMTAT 434
           N+H+ P+K   N  L +L +K   MT T
Sbjct: 763 NKHVQPSKHPSNHDLEELIHKYDAMTGT 790


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 446 VTSKPKKQPVKPIKTNP 496
           V S+PK  P KP++T P
Sbjct: 298 VQSRPKNYPQKPVQTTP 314


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/56 (25%), Positives = 21/56 (37%)
 Frame = +2

Query: 344 PPKQASKPNQAVKKLNITPAKKQEXXXXXXXXXXVTSKPKKQPVKPIKTNPVRPPQ 511
           PP+     N  V    +  + +Q            T++P K P+    T P  PPQ
Sbjct: 50  PPQDIPLVNSDVPLSTLVSSGQQILVLKNAATSFSTNEPAKPPIPNAATKPTFPPQ 105


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
 Frame = +3

Query: 210  KQKLKVPVTRAKKMPLR------NQQFKQMGKCQQLRKKLKVQILVAPMMSHQNRHLSPT 371
            K+K K P    KK+PLR        + K + K QQ+R      + + P+    +RHL  +
Sbjct: 826  KKKDKAPSALCKKLPLRLNYSLWGNRAKSIPKSQQVRSFYINDLYILPV----SRHLKNS 881

Query: 372  KQLKNLTLHQLRN 410
              L    L+ + N
Sbjct: 882  ALLIPSILYHIEN 894


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/69 (24%), Positives = 36/69 (52%)
 Frame = +3

Query: 303 KKLKVQILVAPMMSHQNRHLSPTKQLKNLTLHQLRNKNHQMTATVMMMLRQNLKSSLLNQ 482
           KK++ ++ +A   S +N +      L+N   H+L+N N+Q+   +  + R+    +L N 
Sbjct: 308 KKIE-ELSLAASRSSENENTIRRLALEN---HELKNSNNQLNNHIDDLTREKHLIALSNN 363

Query: 483 *KQIQYVHP 509
            K  +++ P
Sbjct: 364 PKGDEFLSP 372


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
 Frame = +2

Query: 56  IQADVNSLVHQYLEKIDK-SLAQTFMKKTKAKPRAKN--QQTLLDIIAK 193
           +++ V  L++ +L++      AQTF+K+T  K  AK   ++ LLD++++
Sbjct: 6   MKSKVCPLIYHFLQENGYVKTAQTFLKETGDKDLAKGKVKKNLLDLLSQ 54


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 520  LFFLGWTYWICFYWFN 473
            LFF GW Y   FY FN
Sbjct: 1184 LFFFGWYYPSGFYEFN 1199


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 187 NDV*EGLLVFGTWFRFSFLHEGLGQRFVNF 98
           ND+ E LL  G +     LH  L +R VNF
Sbjct: 320 NDLLEILLKHGVYVSLDTLHSWLQERNVNF 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,170
Number of Sequences: 5004
Number of extensions: 33632
Number of successful extensions: 125
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)