Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332D12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0554 + 20351660-20352299,20398588-20398907,20399120-203993...    29   2.3  
01_01_0070 - 542603-542686,542803-543441                               28   4.0  
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808...    27   6.9  
03_06_0316 + 33091194-33091370,33091451-33092155                       27   6.9  
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638...    27   9.1  
03_05_0445 - 24401899-24401992,24402098-24402162,24402262-244022...    27   9.1  

>12_02_0554 +
           20351660-20352299,20398588-20398907,20399120-20399344,
           20399375-20399818
          Length = 542

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
 Frame = +3

Query: 159 KTNKPS*TSLPSLIKQIKQKL--KVPVTRAKKMPLRNQQFKQMGKCQQLRKKLKVQILVA 332
           +  KPS     +   ++ QK+   VP+  A ++P   +  K +   ++     + +  + 
Sbjct: 267 RNRKPSVGEQFACFVEVIQKIHINVPLLDAMQVPTHARYLKDILNNKRPLPTTEGRSWLQ 326

Query: 333 PMMSHQNRHLSPTKQLKNLTLHQLRNKNHQMTATVMMMLR 452
             + H +  +  TKQ  N+ LH+L  K   +  T+   +R
Sbjct: 327 MNLDHNSTVVKLTKQCSNVILHKLSEKKDPVCPTISCSIR 366


>01_01_0070 - 542603-542686,542803-543441
          Length = 240

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/55 (29%), Positives = 19/55 (34%)
 Frame = +2

Query: 344 PPKQASKPNQAVKKLNITPAKKQEXXXXXXXXXXVTSKPKKQPVKPIKTNPVRPP 508
           PP  A+    A     + PAK                 PKK P  P+   PV PP
Sbjct: 49  PPAPATPAPTATPTPPVAPAKAPPVAPAVAPVTPPPPTPKKAPPPPVTPPPVTPP 103


>12_02_0893 +
           24077634-24078379,24079347-24080412,24080741-24080866,
           24081278-24081384,24081720-24081744
          Length = 689

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 183 SLPSLIKQIKQKLK-VPVTRAKKMPLR 260
           SLPSLI   KQK++ VP  +   +PLR
Sbjct: 227 SLPSLIPSTKQKIRIVPSYKPNMLPLR 253


>03_06_0316 + 33091194-33091370,33091451-33092155
          Length = 293

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 24/83 (28%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
 Frame = +2

Query: 284 KVPATKKKAEXXXXXXXXXEPPKQASKPNQAVKKLNITPAKKQEXXXXXXXXXXVT---- 451
           K  A  K A           P K A+KP  A K      AK +           VT    
Sbjct: 171 KPKAAAKPAAKPKAAAKPKSPAKPAAKPKAAPKAKAKPAAKPKAKAAPKPKAAAVTKTKA 230

Query: 452 -SKPKKQPVKPIKTNPVRPPQKK 517
            S P ++P K  KT+    P KK
Sbjct: 231 TSAPARRPAKAAKTSAKDTPSKK 253


>09_04_0365 -
           16962608-16963174,16963301-16963486,16963824-16963896,
           16964307-16964497,16964982-16965198,16965394-16965797,
           16966593-16966658,16966668-16966721,16966945-16967079,
           16967194-16967391,16967734-16967918,16968990-16969527
          Length = 937

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 452 SKPKKQPVKPIKTNPVRPPQKKE 520
           SKP   P  P    P RPPQK E
Sbjct: 21  SKPATAPPPPPPPTPPRPPQKPE 43


>03_05_0445 -
           24401899-24401992,24402098-24402162,24402262-24402297,
           24402419-24402499,24403084-24403155,24403265-24403336,
           24403628-24403678,24404374-24404408,24404615-24404659,
           24405067-24405100
          Length = 194

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 339 MSHQNRHLSPTKQLKNLTLHQLRNKNHQMTATVMMM 446
           M+  N+ + PTKQ+K   + + + +++Q+  T+ MM
Sbjct: 74  MAAMNKQMEPTKQIK--VMREFQKQSNQLDMTLEMM 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,816,221
Number of Sequences: 37544
Number of extensions: 189428
Number of successful extensions: 520
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)