Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332D10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0925 - 12440917-12441560,12441675-12441810                       31   0.56 
01_01_0134 - 1224084-1224269,1224578-1224662,1224763-1225050,122...    31   0.56 
02_05_0482 + 29382696-29383251,29383376-29383692                       29   1.7  
01_01_0017 + 133311-133615,133698-133824,133912-134253                 29   2.3  
06_01_0900 + 6926600-6927202                                           28   4.0  
05_03_0355 - 12885898-12886290,12886351-12886644,12886744-128868...    27   6.9  

>03_02_0925 - 12440917-12441560,12441675-12441810
          Length = 259

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -3

Query: 204 NVFTKGYFVTLLIFIYIIYYRGVCIESASECVGCTCAREHRRDTPPTSAPHTRTCT 37
           N++++GY  +       ++ RG+   S   C    CA +HRR   P  A  T T T
Sbjct: 53  NLYSQGYGTSTAALSTALFNRGL---SCGSCYELRCAGDHRRSCLPGGATVTVTAT 105


>01_01_0134 -
           1224084-1224269,1224578-1224662,1224763-1225050,
           1225114-1225334,1225511-1225642,1226218-1226494,
           1226722-1226770,1226993-1227088,1227779-1227911,
           1228241-1228391,1228484-1228674,1229167-1229382
          Length = 674

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 395 GSTWRPKISKRSTTKHKNGLYRFF 324
           GS + PK+ ++STTKH+ G +R F
Sbjct: 338 GSEFSPKLIQKSTTKHRRGWWRQF 361


>02_05_0482 + 29382696-29383251,29383376-29383692
          Length = 290

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 383 ARSNLGGKVPKPSARAGRERWGAG 454
           +R  LG K P P  R G+ER G G
Sbjct: 39  SRKRLGAKPPSPQRRGGQEREGGG 62


>01_01_0017 + 133311-133615,133698-133824,133912-134253
          Length = 257

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 126 SASECVGCTCAREHRRDTPPTSAPHTRT 43
           S+S      C +   R+ PP  APHT T
Sbjct: 6   SSSTASAAACCKSRSRNPPPAPAPHTST 33


>06_01_0900 + 6926600-6927202
          Length = 200

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 57  VRRWGACLGGARARTCIRRTRSHSRYILHG 146
           VR W   + G R +T IRR R   R+  HG
Sbjct: 76  VREWSELVAGPRWKTFIRRFRRSPRHHHHG 105


>05_03_0355 -
           12885898-12886290,12886351-12886644,12886744-12886871,
           12886952-12888482
          Length = 781

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 207 IPKVYIFLFGLQKKRIAYLVFYSFSLIINS 296
           +PKV++ +FGL+KK   YL  ++   ++ +
Sbjct: 657 LPKVWVKVFGLRKKLREYLTLWAVGSLLGA 686


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,431,996
Number of Sequences: 37544
Number of extensions: 249639
Number of successful extensions: 781
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)