Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332D08f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis... 29 1.5
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr... 28 4.7
U80028-7|AAG23984.1| 370|Caenorhabditis elegans Serpentine rece... 28 4.7
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p... 28 4.7
Z69717-2|CAA93532.2| 204|Caenorhabditis elegans Hypothetical pr... 27 6.2
AC006804-1|AAF60755.1| 340|Caenorhabditis elegans Hypothetical ... 27 6.2
AL023810-4|CAD59138.1| 384|Caenorhabditis elegans Hypothetical ... 27 8.1
AL008881-3|CAD59164.1| 384|Caenorhabditis elegans Hypothetical ... 27 8.1
AL008881-1|CAA15517.2| 343|Caenorhabditis elegans Hypothetical ... 27 8.1
>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
transmembrane conductanceregulator homolog protein 1
protein.
Length = 1247
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 105 DISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFK 245
DI L +A +LR Y KSL + + SP+ + ++ V VC A K
Sbjct: 1117 DIWLAIEACQLREYVKSLPDGLHQMVSPEKMSNEQKCQVNVCRALLK 1163
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
T28C6.9 protein.
Length = 1861
Score = 29.1 bits (62), Expect = 2.0
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 108 ISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSESDIEAIL--N 281
+SLEDQ LEL + + E+ +EK+ K D K+ + + + E D EA N
Sbjct: 1256 LSLEDQNLELEERLQEMEEELLDEKNKKKEVD--AKVEQKSEENWGDWGEDDAEAATESN 1313
Query: 282 SIVSIMVSIPLERGENL 332
+VS + S E + L
Sbjct: 1314 VVVSTLQSTVAELQDRL 1330
>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
F18C12.2b protein.
Length = 2271
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 126 ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 218
A++L Y K AE++ PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756
>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
F18C12.2a protein.
Length = 2279
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 126 ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 218
A++L Y K AE++ PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756
>U80028-7|AAG23984.1| 370|Caenorhabditis elegans Serpentine
receptor, class w protein124 protein.
Length = 370
Score = 27.9 bits (59), Expect = 4.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 88 PCILIPFLNCILLFIIYKH*SECK 17
PCIL+P + C+L+ + K +C+
Sbjct: 233 PCILLPIVTCLLVMDLLKTRKKCR 256
>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
protein RME-8 protein.
Length = 2279
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 126 ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 218
A++L Y K AE++ PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756
>Z69717-2|CAA93532.2| 204|Caenorhabditis elegans Hypothetical
protein E01G6.2 protein.
Length = 204
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 48 NKRIQFKKGIKMQGPAVFMDISLEDQALELRRYFKSLGAE 167
NK+ + K K G ++ MD+ LED+A L ++ G E
Sbjct: 62 NKKTKVSKNGKDFGKSMSMDVLLEDEAAALVEALETFGDE 101
>AC006804-1|AAF60755.1| 340|Caenorhabditis elegans Hypothetical
protein Y53G8B.2 protein.
Length = 340
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 450 HVYYHVIELAARVGFVRE-VFTG 515
H YH + LA+R GFVRE + TG
Sbjct: 201 HPGYHTLTLASRKGFVREALITG 223
>AL023810-4|CAD59138.1| 384|Caenorhabditis elegans Hypothetical
protein Y9C2UA.1b protein.
Length = 384
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 82 ILIPFLNCILLFIIYKH 32
+LIPFLN +++F+ Y H
Sbjct: 170 LLIPFLNGLMIFLYYAH 186
>AL008881-3|CAD59164.1| 384|Caenorhabditis elegans Hypothetical
protein Y9C2UA.1b protein.
Length = 384
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 82 ILIPFLNCILLFIIYKH 32
+LIPFLN +++F+ Y H
Sbjct: 170 LLIPFLNGLMIFLYYAH 186
>AL008881-1|CAA15517.2| 343|Caenorhabditis elegans Hypothetical
protein Y9C2UA.1a protein.
Length = 343
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 82 ILIPFLNCILLFIIYKH 32
+LIPFLN +++F+ Y H
Sbjct: 129 LLIPFLNGLMIFLYYAH 145
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,138,641
Number of Sequences: 27780
Number of extensions: 206976
Number of successful extensions: 701
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -