Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332D07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 33 0.026
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 31 0.079
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 30 0.24
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.24
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 29 0.32
SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 29 0.56
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 29 0.56
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase... 28 0.73
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 0.97
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 0.97
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 1.3
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 27 1.7
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 27 2.2
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 26 3.0
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 3.0
SPAC1782.03 |||microfibrillar-associated protein family protein|... 26 3.9
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb... 26 3.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 5.2
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 25 5.2
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 6.8
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 25 6.8
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 9.0
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 9.0
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 25 9.0
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 25 9.0
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 25 9.0
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 33.1 bits (72), Expect = 0.026
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +3
Query: 15 QEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHNIKLAEVRSAATAKVEEITKDIE- 191
++K +QL+ A +E+ Q+ RL +A Q+ + + R K E+ K E
Sbjct: 598 RDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQEL 657
Query: 192 NKLTTAELNREKEIQKKLDFVKKEERRAELVRQNKSARTE 311
+ E ++KE +KKL ++E R ++ R+ + E
Sbjct: 658 ERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEE 697
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 31.5 bits (68), Expect = 0.079
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Frame = +3
Query: 96 EQREKLRNHNIKLAEVRSAATAKVEEITKDIEN-KLTTAELNREKEIQKKLDFVKKEER- 269
EQ+E++++ + K + S+ K EE K +E+ K TT+E +E+ +KK D KK+
Sbjct: 5 EQKEEIKDISSK--QENSSEVPKAEEAGKVVESQKDTTSEEKKEETTEKKEDDGKKDLSF 62
Query: 270 -RAELVRQ 290
AE+++Q
Sbjct: 63 DEAEVLKQ 70
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 29.9 bits (64), Expect = 0.24
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Frame = +3
Query: 15 QEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHNIKLAEVRSAATAKVEEITK-DIE 191
+E +Q + +EK ++ A+ + EAE++ K E A + EE K + E
Sbjct: 563 REAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEEKAKREAE 622
Query: 192 NKL---TTAELNREKEIQKKLDFVKKEERRAE 278
K + RE E + K + +K +R AE
Sbjct: 623 EKAKREAEEKAKREAEEKAKREAEEKAKREAE 654
Score = 29.5 bits (63), Expect = 0.32
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Frame = +3
Query: 15 QEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHNIKLAEVRSAATAKVEEITK-DIE 191
+E ++ + +EK ++ A+ + EAE++ K E A + EE K + E
Sbjct: 611 REAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAE 670
Query: 192 NKL-TTAELNREKEIQKKLDFVKKEERRAELVRQNK 296
K AE N ++E ++K+ +E + + + K
Sbjct: 671 EKAKREAEENAKREAEEKVKRETEENAKRKAEEEGK 706
Score = 28.7 bits (61), Expect = 0.56
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Frame = +3
Query: 15 QEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHNIKLAEVRSAATAKVEEITK-DIE 191
+E + + +EK ++ A+ + EAE++ K E A + EE K + E
Sbjct: 595 REAEENAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAE 654
Query: 192 NKL-TTAELNREKEIQKKLDFVKKEERRAELVRQNKSARTE 311
K AE N ++E ++K +E + E + K E
Sbjct: 655 EKAKREAEENAKREAEEKAKREAEENAKREAEEKVKRETEE 695
Score = 27.5 bits (58), Expect = 1.3
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Frame = +3
Query: 15 QEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHNIKLAEVRSAATAKVEEITK-DIE 191
+E ++ + +EK ++ A+ + EAE+ K E A + EE K + E
Sbjct: 571 REAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEEKAKREAEEKAKREAE 630
Query: 192 NKL---TTAELNREKEIQKKLDFVKKEERRAE 278
K + RE E + K + +K +R AE
Sbjct: 631 EKAKREAEEKAKREAEEKAKREAEEKAKREAE 662
Score = 26.6 bits (56), Expect = 2.2
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Frame = +3
Query: 15 QEKFQ-QLESAIQEKLQQAADRRLLIEAEQREKLRNHNIKLAEVRSAATAKVEEITK--D 185
QEK + + + +EK + A+ EAE++ K E A + EE K
Sbjct: 538 QEKAEAEAKRKAEEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREA 597
Query: 186 IENKLTTAE--LNREKEIQKKLDFVKKEERRAE 278
EN AE RE E + K + +K +R AE
Sbjct: 598 EENAKREAEEKAKREAEEKAKREAEEKAKREAE 630
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.9 bits (64), Expect = 0.24
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Frame = +3
Query: 87 IEAEQREKLRNHNIKLAEV------RSAATAKV-EEITKDIENKLTTAELNREKEIQKKL 245
+E + +E N ++KL +V RS A V E+ T+D++NK+T E E + K+L
Sbjct: 1648 VEEKLKENSANFDVKLKKVVAETEFRSKAKISVYEKKTRDLQNKITQLEETIE-NLNKQL 1706
Query: 246 DFVKKEERRAELVRQNK 296
+K + V + K
Sbjct: 1707 SNPEKTDESTSSVTETK 1723
Score = 28.7 bits (61), Expect = 0.56
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +3
Query: 21 KFQQLESAIQEKLQQAADRRLLIEAEQRE--KLRNHNIKLAEVRSAATAKVEEITKDIEN 194
+F L+ + K ++ + EA Q+E L++ N +L E +A++ E+ITK+
Sbjct: 1431 RFAHLKQELTNKNKELTSKNAENEAMQKEIESLKDSNHQLQE---SASSDAEQITKEQFE 1487
Query: 195 KLTTAELNREKEI 233
+L + + EKE+
Sbjct: 1488 QLKSEKERTEKEL 1500
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 29.5 bits (63), Expect = 0.32
Identities = 27/100 (27%), Positives = 53/100 (53%)
Frame = +3
Query: 12 NQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHNIKLAEVRSAATAKVEEITKDIE 191
N EKF+++ A+ E A+ +L E+ E+L+ I L A+ ++ + KD +
Sbjct: 931 NNEKFKEVSQALAE-----ANEKLNARDEEIERLKVDIIGLQN----ASLNMQSL-KDSD 980
Query: 192 NKLTTAELNREKEIQKKLDFVKKEERRAELVRQNKSARTE 311
N+ + ++ KE++KKL + +E +V + +S RT+
Sbjct: 981 NRTISDLESKNKELEKKLK--EADEYWLLIVEELESKRTK 1018
>SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 112
Score = 28.7 bits (61), Expect = 0.56
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +3
Query: 54 KLQQAADRRLLIEAEQR--EKLRNHNIKLAEVRSAATAKVEEITKDIENKLTTAELNREK 227
K ++ + + L++ +QR EK +N NI + T E+I + I K T + R++
Sbjct: 35 KKERPFEPKKLVQQQQRLKEKKKNENIIYLKKTMRVTPSEEKIHEMINQKRETKKRKRKQ 94
Query: 228 EIQKKLDFVKKEERRAEL 281
+ + D+ EE EL
Sbjct: 95 KKKNDDDYGVFEEDMLEL 112
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 28.7 bits (61), Expect = 0.56
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +3
Query: 114 RNHNIKLAEVRSAATAKVEEITKDIENKLTTAELNREKEIQKKLDFVKKEERRA 275
R + K++E + A AKVEEI+ EL R+K I +++K EE +A
Sbjct: 616 RTPSDKISESKEAFDAKVEEISDQRAISQRYYEL-RKKMIDNTGEYIKDEEEQA 668
>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 28.3 bits (60), Expect = 0.73
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 159 AKVEEITKDIENKLTTAELNREKEIQKKLDFVKKE 263
A V E NK+ A++ +K ++KK DFVK E
Sbjct: 43 ATVREAVHIETNKMYAAKIMNKKMMEKKQDFVKNE 77
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 0.97
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 18 EKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHNIKLAEVRSAATAK-VEEITKDIEN 194
++ QLE A+ EKL + + ++E ++ + N EV++ T V + + D+++
Sbjct: 1089 KRVDQLEEALNEKLARLVGEQ-MVEGDKEKDKTNEEKNKDEVKAEMTQPVVNQDSHDLQD 1147
Query: 195 KLTT 206
+L T
Sbjct: 1148 QLAT 1151
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 0.97
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 18 EKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHNIKLAEVRSAATAK-VEEITKDIEN 194
++ QLE A+ EKL + + ++E ++ + N EV++ T V + + D+++
Sbjct: 1089 KRVDQLEEALNEKLARLVGEQ-MVEGDKEKDKTNEEKNKDEVKAEMTQPVVNQDSHDLQD 1147
Query: 195 KLTT 206
+L T
Sbjct: 1148 QLAT 1151
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/78 (23%), Positives = 37/78 (47%)
Frame = +3
Query: 15 QEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHNIKLAEVRSAATAKVEEITKDIEN 194
+E +Q+ S+I+ + A R + E E+ + + I+ + ++E D+E+
Sbjct: 220 EESIKQVSSSIELEKINAEQRLQISELEKLKAAQEERIEKLSSNNRNVEILKEEKNDLES 279
Query: 195 KLTTAELNREKEIQKKLD 248
KL E R+K +L+
Sbjct: 280 KLYRFEEYRDKVATLELE 297
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +3
Query: 201 TTAELNREKEIQKKLDFVKKEERRAELVRQNKS 299
T A +R+KE Q+K +++KK ++ A + + N++
Sbjct: 444 TRASYDRQKE-QRKKEYIKKVKKEASIKKHNEA 475
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 84 LIEAEQREKLRNHN-IKLAEVRSAATAKVEEITKDIENKLTTAELNREKEIQKKLDFV 254
LIE + EK + N I L+ + + + K I+N +TT E + ++ +Q +DFV
Sbjct: 237 LIE-KLNEKFTSENAIALSAIGKYTSEFSAFMEKRIKNLITTTEDSLQQSVQSNIDFV 293
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 198 LTTAELNREKEIQKKLDFVKKE-ERRAELVRQN 293
L + L +EK+I KKL F KK E + + RQN
Sbjct: 532 LKDSRLKKEKKIPKKLPFWKKYLELQLTMFRQN 564
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 210 ELNREKEIQKKLDFVKKEERRAELVRQN 293
+ N+E E Q D+V ++ R +L+++N
Sbjct: 81 DANKEPEKQSTSDYVSRKNRHMQLIKKN 108
>SPAC1782.03 |||microfibrillar-associated protein family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 3.9
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Frame = +3
Query: 12 NQEKFQQLESAIQEK-LQQAADRRLLI-EAEQREKLRNHNIKLAEVRSAATA---KVEEI 176
N+E + L+ +K L++ R LL+ E + +L N + + K+ +
Sbjct: 143 NEEDTEVLKKVTSQKILEETIKRELLLKETKNNNELLNDIDDTDGIDPQSEYELWKLRHL 202
Query: 177 TKDIENKLTTAELNREKEIQKKLDFVKKEERRAELVRQNKSAR 305
+ +K + EL REK ++ + EER A+ ++ +++R
Sbjct: 203 LRKKRDKEKSLELEREKMAIEERRLMNSEEREAQDLKDAEASR 245
>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 209
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 21 KFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHNIKLAEVRSAATAKVEEITKD 185
K + E I +++ + R+L + +QRE+ R I R + KV E T+D
Sbjct: 126 KVRWREILIADEVARRRARQLDLANQQREQARQDEIARERKRRVESEKVWEETRD 180
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 5.2
Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Frame = +3
Query: 27 QQLESAIQEKLQQAADRRLLIEAEQREKLRNHNIKLAEVRSAATAKVEEITKDIENKLTT 206
+ L +++ EKL + L+E EQ+ + +SAA + + ++K+ +NK
Sbjct: 3993 EDLSNSLNEKLWDEPNEEDLLETEQK----------SNEQSAANNESDLVSKEDDNKALE 4042
Query: 207 AELNREKEIQKKL-DFVKKEERRAELVRQNKS 299
+ +EKE ++++ D V ++ +++N S
Sbjct: 4043 DKDRQEKEDEEEMSDDVGIDDEIQPDIQENNS 4074
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +3
Query: 45 IQEKLQQAADRRLLIEAEQREKLRNHNIKLAEVRSAATAKVEEITKDIENKLTTAELNRE 224
+ + L D LIE + +R + +K + S + +EE+ KD E+ L +
Sbjct: 327 MSKSLGNVVDPFWLIEKYGVDTIRYYLLKRGRLTSDSNFDIEELEKDEEHDLRRSLGVLL 386
Query: 225 KEIQKKLDFVKKE 263
+Q K F+ E
Sbjct: 387 SRLQSKKLFISNE 399
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 218 VQLGCGQFVLNVFSDLLDFSGRGRADFRQFN 126
V C QF LN S LLD G D+ F+
Sbjct: 171 VARACKQFPLNQRSPLLDLMGSFERDYVNFS 201
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +3
Query: 84 LIEAEQREKLRNHNIKLAEVRSAATAKVEEITKDI--ENKLTTAELNREKEIQKKLDFVK 257
L+ A Q K + IKL E+ T ++ +IT+D L + +++ KE K+ D
Sbjct: 273 LLSASQLLKPKQQAIKLIEIGPRMTLELIKITEDAMGGKVLYHSHVHKSKEEIKQQDNFH 332
Query: 258 KEERRAELVRQNK 296
++ R + R+ +
Sbjct: 333 EQSRALKEKRKKE 345
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 75 RRLLIEAEQREKLRNHNIKLAEVR-SAATAKVEEITKDIENKLTTAELNREKEIQKKLDF 251
R +L E ++ L + + E + A K E+ +DI K + REK + K D
Sbjct: 362 RTILYETRNKKTLVQNLLNSLEGKLQAHLEKFEQTERDISEKNEEVKSLREKAAKVKNDC 421
Query: 252 VKKEERRAELVRQ 290
+++ R +Q
Sbjct: 422 TSEKKTRQSYEQQ 434
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 207 AELNREKEIQKKLDFVKKEERRAELVRQNKSARTET 314
A L KE+QKK D +K E + V Q K +T
Sbjct: 171 AILALSKELQKKSDDFEKRESEKKRVAQEKVIAAKT 206
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +3
Query: 204 TAELNREKEIQKKLDFVKKEERRAELVRQNKSARTE 311
TA LNR+ ++KK KK+ + +++ + + E
Sbjct: 292 TAILNRKPTLRKKKSIPKKQNESSSTIQKENTVQQE 327
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +3
Query: 93 AEQREKLRNHNIKLAEVRSAATAKVEEITKDIENKLTTAELNREKEIQK-KLDFVKKEER 269
A EKL ++ + S + E+ K EN+L T + ++K K D + + R
Sbjct: 391 ALHEEKLMKMEAEMKTIFSQKVQEKEDRLKQSENELRTRHREMKAALEKQKADLIDHKNR 450
Query: 270 --RAELVRQNKSAR 305
+A+ +N+ ++
Sbjct: 451 LMQAKAAAENEKSK 464
>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 240
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 24 FQQLESAIQEKLQQAADRRLLIEAEQREKLRNHNIKLAEVRSAATA 161
+ ++ES +EK+Q+ R IEA + K R ++L + +A A
Sbjct: 133 YLEMESH-EEKIQEIVSRNKEIEATEERKRRIKQLELQKKEAARRA 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,390,951
Number of Sequences: 5004
Number of extensions: 19245
Number of successful extensions: 110
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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