Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332D05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    31   0.10 
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    29   0.56 
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    27   1.3  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   1.7  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   2.2  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    26   3.0  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    26   3.0  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   3.0  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    26   3.9  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   6.8  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   9.0  

>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 344 HFFIDSFDSFRNGRSYFLYYCFCMRLISLY 255
           +FF+ S    R  + Y +Y+C+C   I+L+
Sbjct: 37  YFFMSSKSFVRGVKRYLIYFCYCANFIALF 66


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +3

Query: 66  STENKSAKLDGPGNNSPSSGAKISTTTEFQRPNIVKGTPNVGRKTNQTMKQVTSSNQVNK 245
           +T     KL G    + +S  K   +TE  + N     PN  +KT +T++Q        K
Sbjct: 575 TTAEGKEKLSGDSTETGNSTNK-EASTEDTKANATASAPNKKKKTVETLQQQVIKEIARK 633

Query: 246 EV 251
           E+
Sbjct: 634 EI 635


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +3

Query: 57  TIKSTENKSAKLDGPGNNSPSSGAKISTTTEFQRPNIVKGTPNVGRKTNQ 206
           T+ + E+ S + DG  NN+   G  +S   E Q+   ++    +  K  Q
Sbjct: 698 TVGTHESNSYEFDGASNNNQRVGDDVSKDWEIQQDFSIENDTELSEKVGQ 747


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
 Frame = -1

Query: 500 HSFT*SWSDRGISYPLIRYRLL--HYDTF*IFRWVRIHSLYFLRYKCTSRLNVPHFFIDS 327
           H+F   +S   +S    R +L   H+ TF I  +      +F  +    R ++   FI  
Sbjct: 41  HAFVFLFSHTLVSSQFRRLKLPYHHHHTFTIEAFFYWFFFFFFFFSHCRRFHIA-IFIHP 99

Query: 326 FDS----FRNGRSYF-LYYCFCMRLISLYCNFFINLVTRRHL 216
           +DS    F     YF L+  F     SL+ NFF  L   +HL
Sbjct: 100 YDSNVVPFFCFFFYFSLFSFFSFLFTSLHFNFFFRLCRHKHL 141


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 380 KSKGNEYEPNEKSRRYRSEAICTESEDKKYPYQTN 484
           ++K NEY+ N  +     + + + ++D++YP  TN
Sbjct: 19  ENKENEYQTNITNETSNVQNLSSGNDDQQYPNSTN 53


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = -2

Query: 259 CTVTSLLTWLLDVTCFIVWFVLRPTFGVPLTMLGL*NSVVVL 134
           C++++ L ++L + C  +W +    FG+   +LG+ + VV++
Sbjct: 243 CSISAALFFILLLVCIPIWTLKHMLFGL-FQVLGVQSCVVIV 283


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = -2

Query: 259 CTVTSLLTWLLDVTCFIVWFVLRPTFGVPLTMLGL*NSVVVL 134
           C++++ L ++L + C  +W +    FG+   +LG+ + VV++
Sbjct: 233 CSISAALFFILLLVCIPIWTLKHMLFGL-FQVLGVQSCVVIV 273


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 136 VQRQNFKDLTSLKVHQTLDVKRTRL*NK*RRVTKLIKKLQYKDIRRI 276
           + R+ F+DL  LKV +  +  RT +  +  + T L K +Q K +R++
Sbjct: 680 ISRKMFEDLADLKVRRNPETSRTVMDRRTFQQT-LEKLMQEKKVRKL 725


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +2

Query: 281 NSNTRNNYDRYENYQNCQ*RSAERSI*KYIYTAKSKGNEYEPNEKSRRY 427
           N N R +YD Y +Y   + R +      Y   ++    +Y  +++  RY
Sbjct: 212 NENRRRHYDSYSSYDELERRRSSNE--SYSRRSELPRRDYNRHDERERY 258


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 357 SRSTFIPQKVKGMNTNPTKNLEGI 428
           + +T  P KV   N+N T+NL GI
Sbjct: 514 TEATTSPVKVSTKNSNTTENLNGI 537


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 269 LISLYCNFFINLVTRRHLFHSLVRFTSNVWCTF 171
           LIS+Y    I+L+     F+SL  F  +  C F
Sbjct: 106 LISVYIGIVISLLVSLFYFYSLPNFPYSKTCIF 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,349
Number of Sequences: 5004
Number of extensions: 40917
Number of successful extensions: 127
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)