Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332D05f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 31 0.42
12_02_1155 + 26541137-26541142,26541244-26542623,26542730-265428... 31 0.74
12_01_0989 + 10048036-10048125,10048232-10048816,10048930-100493... 29 1.7
07_03_0028 + 12611734-12612522 29 3.0
03_05_0932 + 28924891-28924935,28925982-28926062,28926464-289265... 27 6.9
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 27 9.1
06_01_0041 + 403634-403817,404154-404332,404431-404536,404620-40... 27 9.1
01_01_0704 + 5434331-5434337,5434480-5434519,5435062-5435134,543... 27 9.1
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 31.5 bits (68), Expect = 0.42
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +3
Query: 12 SISTMDYVK-KIGKDVTIKSTENKSAKLDGPGNNSPSSGAKISTTTEFQRPNIVKGTPNV 188
S MD V+ +G + + S E + LDG NN + ++ + R GT +
Sbjct: 4202 STDMMDRVQPSLGPSLEVSSDEKTTVPLDGLANNLSNVSPSVTASQVLGRSENGSGTGAL 4261
Query: 189 GRKTNQTMKQVTSSNQVNKEVTVQRYQ 269
+T + Q S ++E++ Q+ Q
Sbjct: 4262 SGETVPSNSQENSEGTPSEEISKQQPQ 4288
>12_02_1155 +
26541137-26541142,26541244-26542623,26542730-26542852,
26542996-26543168,26543332-26543572,26543931-26544023,
26544092-26544232,26544358-26544450,26544633-26544837,
26544993-26545078,26545532-26545620,26545736-26545820,
26545898-26545954,26546319-26546399,26547130-26547321
Length = 1014
Score = 30.7 bits (66), Expect = 0.74
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 48 KDVTIKSTENKSAKLDGPGNNSPSSGAKISTTTEFQRP---NIVKGT-PNVGRKTNQTMK 215
K +T+ + + D G +SP SG KIS+ + P + K T P KT T K
Sbjct: 246 KQLTLDFSAGRVISSD-TGGDSPGSGGKISSWKKLPSPAEKTLHKVTEPTTEEKTTPTKK 304
Query: 216 QVTSSNQVNKEVTVQR 263
+ + N+V + V+R
Sbjct: 305 KAITRNKVAVDEIVER 320
>12_01_0989 +
10048036-10048125,10048232-10048816,10048930-10049331,
10049419-10049477,10049711-10049801,10050243-10050329,
10050723-10050791
Length = 460
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 108 NSPSSGAKISTTTEFQRPNIVKGTPNVGRKTNQTMKQVTSSNQVNKEV 251
+SPSSG+K T++ +R + N N++ +Q TSS N+ +
Sbjct: 254 SSPSSGSKGPTSSAKRRSRLHSAKENSSPPNNESDQQATSSVPQNRSI 301
>07_03_0028 + 12611734-12612522
Length = 262
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 42 IGKDVTIKSTENKSAK--LDGPGNNSPSSGAKISTTTEFQRP 161
IG+ T+ +T ++ D PG +SP G STT QRP
Sbjct: 17 IGQQATVAATATATSDGIRDSPGTSSPFRGGGGSTTPTPQRP 58
>03_05_0932 +
28924891-28924935,28925982-28926062,28926464-28926512,
28926599-28926677,28926762-28926921,28927307-28927440,
28927814-28927882,28928064-28928151,28928396-28928471,
28929267-28929340,28929478-28929585,28929858-28930160,
28930483-28930587,28930670-28930750,28930838-28931852,
28932086-28932201
Length = 860
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 6 DSSISTMDYVKKIGKDVTIKSTENKSAKLDGPGNNSPSS 122
DS ++ + K +GK+ K ++ AK++G N P+S
Sbjct: 59 DSRLNGLPNKKMVGKETVAKIVDDTFAKMNGSTNAVPAS 97
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 299 YFLYYCFCMRLISLYCNFFIN 237
Y +++ +C L+ YCNFF N
Sbjct: 2430 YAIWFNWCNHLLQPYCNFFEN 2450
>06_01_0041 +
403634-403817,404154-404332,404431-404536,404620-404936,
405231-405605,406199-406283,406570-408066,408575-408738
Length = 968
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 377 AKSKGNEYEPNEKSRRYR 430
+K +GN Y+PN S RY+
Sbjct: 99 SKDRGNTYQPNRTSERYQ 116
>01_01_0704 +
5434331-5434337,5434480-5434519,5435062-5435134,
5435352-5435468
Length = 78
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 253 VTSLLTWLLDVTCFIVWFVLRPTFGV 176
VTS+LT ++V C WF + P+ G+
Sbjct: 27 VTSVLTISIEVQCQEQWFPISPSTGI 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,188,417
Number of Sequences: 37544
Number of extensions: 202827
Number of successful extensions: 589
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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