Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332D05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    29   1.5  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    29   1.5  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    29   1.5  
U64857-17|AAC25865.1|  161|Caenorhabditis elegans Hypothetical p...    29   2.7  
U50068-8|AAB37739.1|  865|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL032635-3|CAB63374.1|  635|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z66512-8|CAA91324.2|  349|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   4.7  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
            protein 104, isoforma protein.
          Length = 1584

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = +3

Query: 78   KSAKLDGPGNNSPSSGAKISTTTEFQRPNIVKGTPNVGRKTNQTMKQVTSSNQVNKEVTV 257
            KS + +    NS + G ++ST   FQ+P++V  TP   +K N  ++   +S +   ++ V
Sbjct: 999  KSEQFNFERQNS-ALGRRLSTKLTFQQPSLVISTPVKSKKANAPIQNNNASVKSKHDLLV 1057


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
            protein 104, isoformb protein.
          Length = 1628

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = +3

Query: 78   KSAKLDGPGNNSPSSGAKISTTTEFQRPNIVKGTPNVGRKTNQTMKQVTSSNQVNKEVTV 257
            KS + +    NS + G ++ST   FQ+P++V  TP   +K N  ++   +S +   ++ V
Sbjct: 1046 KSEQFNFERQNS-ALGRRLSTKLTFQQPSLVISTPVKSKKANAPIQNNNASVKSKHDLLV 1104


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
            protein protein.
          Length = 1584

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = +3

Query: 78   KSAKLDGPGNNSPSSGAKISTTTEFQRPNIVKGTPNVGRKTNQTMKQVTSSNQVNKEVTV 257
            KS + +    NS + G ++ST   FQ+P++V  TP   +K N  ++   +S +   ++ V
Sbjct: 999  KSEQFNFERQNS-ALGRRLSTKLTFQQPSLVISTPVKSKKANAPIQNNNASVKSKHDLLV 1057


>U64857-17|AAC25865.1|  161|Caenorhabditis elegans Hypothetical
           protein C37C3.11 protein.
          Length = 161

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 356 LNVPHFFIDSFDSFRNGRSYFLYYCFCMRLISLYCNFFINLVTRRHL 216
           L VP FF+ +  S   G  YF+  CF +  + L+  + +  VT + L
Sbjct: 108 LYVPLFFLQTSHSLMEGLDYFI--CFSLSGVLLFLQWAVKQVTEQML 152


>U50068-8|AAB37739.1|  865|Caenorhabditis elegans Hypothetical
           protein C01G5.8 protein.
          Length = 865

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 6   DSSISTMDYVKKIGKDVTIKSTENKSAKLDGPGNNSPSSGAKISTTTEF--QRPNIVKGT 179
           DSS+ T+D   +I   V +K+   K  KLDG  N        I +  +F   + +I  GT
Sbjct: 308 DSSMKTLDEALQISDVVALKNV-TKKFKLDGTKNRQ----ELIQSLRKFAQSQQSIFGGT 362

Query: 180 PNVGRKTNQTMKQ 218
            NV +   +++KQ
Sbjct: 363 GNVEKSILKSLKQ 375


>AL032635-3|CAB63374.1|  635|Caenorhabditis elegans Hypothetical
           protein Y51A2A.5 protein.
          Length = 635

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 6   DSSISTMDYVKKIGKDVTIKSTENKSAKLDGPGNNSPSSGAKISTTTEFQRPNI 167
           D SIS MD V +  KDV +   +N +       ++  SS  +I   +E    N+
Sbjct: 392 DESISEMDTVDQKAKDVNLGPPQNSNKHCSKDFHSFESSTIRIDDFSEIDNVNV 445


>Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical
           protein C08B6.2 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 356 LNVPHFFIDSFDSFRNGRSYFLYYCFCMRLISLYCNF-FINLVTRRHLF 213
           L+  +FF+     F +   YF YY   M L S   N+  INL  + ++F
Sbjct: 382 LDQENFFVLHLFCFYHNIKYFFYYIIFMLLFSFNLNYNQINLENKYNIF 430


>Z66512-8|CAA91324.2|  349|Caenorhabditis elegans Hypothetical
           protein F52H3.4 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = +3

Query: 6   DSSISTMDYVKKIGKDVTIKSTENKSAKLDGPGNNSPSSGAKISTTTEFQRP 161
           D  +   +  KK+   +++++ + ++A  +      P S  K  TTT F +P
Sbjct: 45  DGELELRENHKKVNPQMSLRAVKVENADENSKNKEDPQSVVKEKTTTRFIKP 96


>U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical
           protein B0244.10 protein.
          Length = 628

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 290 YYCFCMRLISLYCNFFINLVTRRHLFHSLVRFTSNV 183
           +YC     I+LY  +F++  TR+H    L RF S++
Sbjct: 61  FYCL---FIALYTYYFLDNETRKHYVFVLSRFLSSI 93


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/81 (20%), Positives = 42/81 (51%)
 Frame = +2

Query: 248 SYSTKISDAYKNSNTRNNYDRYENYQNCQ*RSAERSI*KYIYTAKSKGNEYEPNEKSRRY 427
           S S+  S +  +S++ ++    E+ ++   + A++ + K+   A+S  +    +  S   
Sbjct: 114 SSSSSSSSSSSSSSSSSSSSESEDEKHHHKKHAKKHLKKHHKKAESSSSSSSSSSSSSSS 173

Query: 428 RSEAICTESEDKKYPYQTNFK 490
            S +  +ESED+K+ ++ + K
Sbjct: 174 SSSSSSSESEDEKHHHKKHAK 194


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +3

Query: 18   STMDYVKKIGKDVTIKSTENKSAKLDGPGNN---SPSSGAKISTTT 146
            ST+      G  VT+ STE  S+ +     N   S SSG+ +ST T
Sbjct: 945  STVSDSTSSGSTVTVGSTEGSSSPIPSTSQNTNPSTSSGSSMSTQT 990


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,716,339
Number of Sequences: 27780
Number of extensions: 217358
Number of successful extensions: 785
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)