Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332D04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   121   4e-28
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   121   4e-28
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...   120   5e-28
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...   100   7e-22
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    36   0.013
Z75537-5|CAA99837.3|  335|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U53148-3|AAB37077.1|  282|Caenorhabditis elegans Ground-like (gr...    27   8.1  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  121 bits (291), Expect = 4e-28
 Identities = 52/78 (66%), Positives = 65/78 (83%)
 Frame = +3

Query: 171 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 350
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 351 KTTAKGLFKILEKYRPET 404
             +A+  FK+L+KYRPE+
Sbjct: 90  SQSARQAFKLLDKYRPES 107


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  121 bits (291), Expect = 4e-28
 Identities = 52/78 (66%), Positives = 65/78 (83%)
 Frame = +3

Query: 171 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 350
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 351 KTTAKGLFKILEKYRPET 404
             +A+  FK+L+KYRPE+
Sbjct: 90  SQSARQAFKLLDKYRPES 107


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score =  120 bits (290), Expect = 5e-28
 Identities = 52/78 (66%), Positives = 65/78 (83%)
 Frame = +3

Query: 171 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 350
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192

Query: 351 KTTAKGLFKILEKYRPET 404
             +A+  FK+L+KYRPE+
Sbjct: 193 SHSARQAFKLLDKYRPES 210


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score =  100 bits (239), Expect = 7e-22
 Identities = 43/60 (71%), Positives = 51/60 (85%)
 Frame = +3

Query: 171 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 350
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
 Frame = -1

Query: 503 CRIGWCWP-LWWRLIFLGNL-SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCL 339
           C +G C   L   +  + N  SF SFP  QP+   C +++P F+ N+EKA + C ++Q  
Sbjct: 142 CFLGLCMAILQLSIAAVANYYSFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIG 201

Query: 338 GKLV 327
           G+++
Sbjct: 202 GRII 205


>Z75537-5|CAA99837.3|  335|Caenorhabditis elegans Hypothetical
           protein F18E2.4 protein.
          Length = 335

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 2/108 (1%)
 Frame = -1

Query: 509 CLCRIGWCWPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKL 330
           CL   GWC      L+ + N  F    +P+    F  + VF        S +L+   G L
Sbjct: 112 CLGLSGWCMACGSTLLLVINRVFDVLCRPVSEFLFDGKRVFF-------SIALIYTYGTL 164

Query: 329 VDRRGHFQTTLKYSLLALDADIL--GPSYKSGQVTSWLNALTNSKVLW 192
           V            +++A  AD L   P YK+ ++T W      S   W
Sbjct: 165 VSMFSP-SIIFNSAIMAWIADPLTIDPEYKTDEITDWYRNHVQSTNNW 211


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 319 LRSTNLPRHWTRLQLRA 369
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


>Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical
           protein F25H8.5c protein.
          Length = 732

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +2

Query: 260 QVYPHPAPE--GCTSASSESAPSDQPIYP 340
           Q YP P P+  GCT +  +  P  QP  P
Sbjct: 161 QQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189


>Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical
           protein F25H8.5b protein.
          Length = 369

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +2

Query: 260 QVYPHPAPE--GCTSASSESAPSDQPIYP 340
           Q YP P P+  GCT +  +  P  QP  P
Sbjct: 161 QQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189


>Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical
           protein F25H8.5a protein.
          Length = 780

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +2

Query: 260 QVYPHPAPE--GCTSASSESAPSDQPIYP 340
           Q YP P P+  GCT +  +  P  QP  P
Sbjct: 161 QQYPQPQPQRGGCTYSQPQPQPQQQPQPP 189


>U53148-3|AAB37077.1|  282|Caenorhabditis elegans Ground-like (grd
           related) protein10 protein.
          Length = 282

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
 Frame = +2

Query: 248 CKMAQVYPHPAPEGCTSAS-------SESAPSDQPIYPDTGQDYS*GP 370
           C      P P P GC+ +        +++   DQPIY  T Q Y+  P
Sbjct: 35  CAPRPACPPPPPSGCSGSGVRAVARGAKTMTFDQPIYSPTPQSYAQPP 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,232,966
Number of Sequences: 27780
Number of extensions: 185189
Number of successful extensions: 578
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)