Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332D02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    30   0.24 
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    27   2.2  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   3.0  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    25   5.2  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   5.2  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   5.2  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    25   6.8  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    25   6.8  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   9.0  

>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 211 FYCKTCKSFVSDVALTRKSH 270
           +YCK C+ FV D    R+SH
Sbjct: 11  YYCKYCQIFVKDTPFARRSH 30


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 264 LASQRNITNKRFTCFTVKHVWHEFLPRI*FKNDL 163
           L+ + N+      CFTV H W+  L ++    D+
Sbjct: 58  LSKEENVWINLQDCFTVAHFWYRILIKVGVDKDI 91


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 10  KKGKVNSIRNRRNERTSEEFNIFSRKDKHIKSPNK 114
           K+  V S + R+N  T  E  I ++K KH KS NK
Sbjct: 128 KEKPVKSKQLRKNSVTEFEKPIETKKSKHRKSRNK 162


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 4   ALKKGKVNSIRNRRNERTSEEFNIFSRKDKHIKSPNKGSNLQTK 135
           ALKK +  + R  + E  +        ++K +  PNK SN Q K
Sbjct: 50  ALKKARKQASRRAKAEAAAANNPPGVSEEKKVAIPNKNSNQQKK 93


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 293 IFEHRDIV*DLRVSATSLTKDLHVLQ*NMFGTNSCHEFDL 174
           IFEH +    LR S+ +    L +++ + F    C +FD+
Sbjct: 45  IFEHNNNSPTLRSSSVACNTCLKIIRNDSFHCTKCFDFDV 84


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 433 PTVPEYP-KCDNCEVHFVRKASVTIH 507
           P +P    +CD C++ FV+++ +T H
Sbjct: 132 PNMPNATFRCDKCDMMFVKQSGLTNH 157


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 404 NLKSCNFKSFLNLCKFMWVFNALFESTSPH-STHGYL 297
           NL S N KSFLN C      + +F +T+    TH +L
Sbjct: 533 NLVSKNLKSFLNSC---LTIDTIFRATAAELLTHSFL 566


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 202 PNMFYCKTCKSFVSDVALTRKSHTMSRCS 288
           PN    KT    + D+AL+ K+H++++ S
Sbjct: 158 PNAEQLKTLSKRLLDLALSEKTHSLNKAS 186


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 470 SQLSHFGYSG-TVGHTSAPFSSKNLK 396
           S+LS+F  S  +  +TSAPFS+K  K
Sbjct: 184 SELSYFVNSSMSFANTSAPFSTKGYK 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,915
Number of Sequences: 5004
Number of extensions: 40263
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)