Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332D02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0523 + 9112577-9112608,9112626-9113251,9113696-9113747,911...    29   1.7  
08_01_0996 + 10089800-10090149,10090426-10090483,10092922-100931...    28   4.0  
03_02_0905 - 12292322-12293073,12293288-12293471                       28   4.0  
09_04_0075 - 14340458-14340551,14340643-14340814,14340895-143410...    27   9.1  

>03_02_0523 +
           9112577-9112608,9112626-9113251,9113696-9113747,
           9114713-9114782
          Length = 259

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = +1

Query: 79  SRKDKHIKSPNKGSNLQTKLVQNAKARLKIVFKSN-SWQEFVPNMFYCKTCKS-FVS--- 243
           S K  HI+SP+K    Q +L     + LK  F++  +WQE   +      C S FV+   
Sbjct: 13  SEKFYHIESPHKKRKSQYELSDTRVSSLKYKFRNRLAWQEDESSRTESLGCNSIFVNRNY 72

Query: 244 DVALTRKSHTMSRCSN 291
           D+ +  +   +  C N
Sbjct: 73  DMDMVNRVEELESCDN 88


>08_01_0996 +
           10089800-10090149,10090426-10090483,10092922-10093126,
           10093201-10093280,10093377-10093477,10093566-10093691,
           10094099-10094101,10094736-10094763,10094875-10094961,
           10095187-10095273,10095346-10095411,10095511-10095603,
           10095688-10095744,10095834-10095959,10096049-10096139,
           10096233-10096321,10096951-10097141,10097224-10097322,
           10098814-10098829
          Length = 650

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 34  RNRRNERTSEEFNIFSRKDKHIKSPNKGSNLQ 129
           R R +ERTS       RK  H++ P  GS L+
Sbjct: 107 RRRSSERTSGRSKHIERKQLHLRIPRYGSQLR 138


>03_02_0905 - 12292322-12293073,12293288-12293471
          Length = 311

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 199 VPNMFYCKTCKSFVSDVALTRKSHTMSRCSNIVK 300
           +P   YCK C++ ++D  +T K    S C   ++
Sbjct: 82  IPAELYCKICRNVMADAVVTSKCCFDSFCDGCIR 115


>09_04_0075 -
           14340458-14340551,14340643-14340814,14340895-14341066,
           14341617-14341811,14341886-14342053,14342150-14342335,
           14342797-14342881,14342896-14343206,14344222-14344569
          Length = 576

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 286 SNIVKYPCVLCGLVLSNNALKTHMNLH 366
           SN+  Y C++CG       LK+H   H
Sbjct: 131 SNLNVYACLVCGKYYQGRGLKSHAYTH 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,400,059
Number of Sequences: 37544
Number of extensions: 219656
Number of successful extensions: 533
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)