Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332D02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97405-6|AAB53013.2|  142|Caenorhabditis elegans Hypothetical pr...    31   0.66 
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass...    29   2.7  
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U50069-4|AAB37557.1|  355|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U41552-7|AAU05560.1| 1174|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U41552-6|AAU05561.1| 1203|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP ...    28   4.7  
Z70757-7|CAA94803.2|  387|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>U97405-6|AAB53013.2|  142|Caenorhabditis elegans Hypothetical
           protein T09B4.4 protein.
          Length = 142

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 464 LSHFGYSGTVGHTSAPFSSKNLKSCNFKSFLNLCK 360
           L   GYS T   T   F   N K   F +FL++CK
Sbjct: 36  LRSLGYSPTASKTDIYFKKLNKKPIEFATFLDICK 70


>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 213 protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 49   ERTSEEFNIFSRKDKHIKSPNKGSNLQTKLVQNAKARLKIVFKSNSW 189
            ERT +     SR+D H K+      L++KL +  K +++ V +   W
Sbjct: 889  ERTLDALKKQSREDSHGKAKKTDKQLESKLREEQKRQIEHVERCKVW 935


>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical protein
            ZK512.3 protein.
          Length = 1418

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
 Frame = +1

Query: 10   KKGKVNSIRNRRNE--RTSEEFNIFSRKDKHIKS-PNKGSNLQ--TKLVQNAKARLKIVF 174
            +K K+++ ++   E         + + +D +  S   K S LQ   K  ++   ++ +  
Sbjct: 1117 QKAKISANKSELQELHNIHNHIRMMTLRDSYENSGTRKASELQFFEKYPESNILKISVNM 1176

Query: 175  KSNSWQEFVPNM---FYCKTCKSFVSDV 249
             S  W   VP     FYCK  + F SDV
Sbjct: 1177 VSKPWTVLVPRYNPPFYCKPAEDFPSDV 1204


>U50069-4|AAB37557.1|  355|Caenorhabditis elegans Hypothetical
           protein C09B9.1 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 158 RAFAF*TNFVCKLLPLFGLFICLSLREKMLNSSEVLSFL 42
           R   F TN +C +L +   FIC+      LN + VL  L
Sbjct: 161 RINVFPTNMICLILQIVPFFICILNYVATLNGAAVLKVL 199


>U41552-7|AAU05560.1| 1174|Caenorhabditis elegans Hypothetical protein
            K07E3.7a protein.
          Length = 1174

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 136  ISFVNCCLYLGSLYAYLYEK 77
            + F +CC+YLG  YA++Y K
Sbjct: 1023 VFFTSCCMYLG--YAFVYSK 1040


>U41552-6|AAU05561.1| 1203|Caenorhabditis elegans Hypothetical protein
            K07E3.7b protein.
          Length = 1203

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 136  ISFVNCCLYLGSLYAYLYEK 77
            + F +CC+YLG  YA++Y K
Sbjct: 1052 VFFTSCCMYLG--YAFVYSK 1069


>AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP
           homologous cationchannel protein protein.
          Length = 1027

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
 Frame = +1

Query: 10  KKGKVNSIRNRRNE--RTSEEFNIFSRKDKHIKS-PNKGSNLQ--TKLVQNAKARLKIVF 174
           +K K+++ ++   E         + + +D +  S   K S LQ   K  ++   ++ +  
Sbjct: 726 QKAKISANKSELQELHNIHNHIRMMTLRDSYENSGTRKASELQFFEKYPESNILKISVNM 785

Query: 175 KSNSWQEFVPNM---FYCKTCKSFVSDV 249
            S  W   VP     FYCK  + F SDV
Sbjct: 786 VSKPWTVLVPRYNPPFYCKPAEDFPSDV 813


>Z70757-7|CAA94803.2|  387|Caenorhabditis elegans Hypothetical
           protein ZK287.7 protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -1

Query: 446 SGTVGHTS--APFSSKNLKSCNFKSFLNLCKFMWVFNALFESTSPHSTHG 303
           +G +GH     P     L++ N     +L  +  V+N +FE    H  HG
Sbjct: 287 AGNMGHRIFIPPHLCSTLETSNRSLLTSLPIYCHVYNTIFEDVGGHEAHG 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,632,275
Number of Sequences: 27780
Number of extensions: 232168
Number of successful extensions: 703
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)