Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332C12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    38   0.001
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    27   1.3  

>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 281 LEFQVVVLAAGKGSRMPDVGG-SVSKCLLPVGPYPVLWYPLNMLE 412
           +EFQ VV A    S  P  G  ++ K LLP+G  P+L YPL  LE
Sbjct: 37  IEFQAVVFAGFGNSLYPLTGSDALPKALLPIGNKPMLHYPLYWLE 81


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 30  VVNSALYNVDEDNSSVTTPRAEFGTRPRAGKS 125
           +VN A   V  +N ++  P  +FGTR   GK+
Sbjct: 798 IVNLAQNFVGSNNINLLMPNGQFGTRSEGGKN 829


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,765
Number of Sequences: 5004
Number of extensions: 49218
Number of successful extensions: 108
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)