Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332C12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0238 - 13357877-13357954,13358186-13358302,13358537-133586...    42   3e-04
05_04_0121 + 18181701-18182021                                         30   0.98 
02_03_0292 - 17358129-17358213,17358462-17358541,17358627-173587...    28   5.2  
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270...    27   6.9  

>06_02_0238 -
           13357877-13357954,13358186-13358302,13358537-13358641,
           13359301-13359393,13359801-13359888,13359979-13360028,
           13361147-13361205,13361297-13361516,13361611-13361691,
           13364034-13364111,13364203-13364298,13364370-13364435
          Length = 376

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +2

Query: 281 LEFQVVVLAAGKGSRM-PDVGGSVSKCLLPVGPYPVLWYPLNMLE 412
           ++FQVVVLA G   ++ P V   V K LLPV   PVL Y L++LE
Sbjct: 1   MDFQVVVLAGGTSEKLSPLVSKDVPKALLPVANRPVLSYVLDLLE 45


>05_04_0121 + 18181701-18182021
          Length = 106

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -2

Query: 157 VIAFKQTTLNSDFPARGLVPNSARGVVTELLSSSTLYNAELTTPPTNAAP 8
           ++A K+T L+ D P RG  P+ A G   E      L   +   PP  A P
Sbjct: 31  ILAIKRT-LHIDDPGRGAQPSGAAGAGGEAQRGRALNGRDALCPPGQACP 79


>02_03_0292 -
           17358129-17358213,17358462-17358541,17358627-17358797,
           17359440-17359541,17360216-17360365,17360549-17360671,
           17360781-17360867,17361209-17361289,17362071-17362210,
           17363490-17363534,17365315-17365485,17365784-17365805
          Length = 418

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 102 CRIRHEGWSQSCYL 61
           CR+ H  WS++CYL
Sbjct: 342 CRLMHSDWSKACYL 355


>06_03_1067 -
           27326167-27326295,27326572-27326656,27326993-27327033,
           27327274-27327333,27327843-27327962,27328842-27329114,
           27329186-27329257,27329798-27329860,27329957-27330139,
           27330544-27330660,27330734-27332683,27332770-27332907,
           27333003-27333284,27334650-27335522
          Length = 1461

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 100 PNSARGVVTELLSSSTLYNAELTTPPTNAAPR 5
           P +AR +   L +  +LY+A    PP++++PR
Sbjct: 10  PRTARQLADALTAHLSLYHAATPPPPSSSSPR 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,531,117
Number of Sequences: 37544
Number of extensions: 312660
Number of successful extensions: 739
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)