Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332C12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14521-1|AAA64269.1|  360|Caenorhabditis elegans ppp-1 protein.        44   9e-05
AC006608-3|AAF39757.1|  404|Caenorhabditis elegans Pyrophosphory...    44   9e-05
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U58758-1|AAB93429.2|  819|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U53180-6|AAA96288.1|  202|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p...    28   4.7  
AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial...    27   6.2  

>U14521-1|AAA64269.1|  360|Caenorhabditis elegans ppp-1 protein.
          Length = 360

 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = +2

Query: 284 EFQVVVLAAGKGSRMPDVGGSVSKCLLPVGPYPVLWYPLNMLEKNWIS 427
           E Q ++L +G G+RMP +   V KCLLPV   P+  YPL+ L +  I+
Sbjct: 3   EMQGILLCSGGGTRMPVLTRHVQKCLLPVVGVPMFLYPLSSLLRTGIT 50


>AC006608-3|AAF39757.1|  404|Caenorhabditis elegans
           Pyrophosphorylase family protein 1 protein.
          Length = 404

 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = +2

Query: 284 EFQVVVLAAGKGSRMPDVGGSVSKCLLPVGPYPVLWYPLNMLEKNWIS 427
           E Q ++L +G G+RMP +   V KCLLPV   P+  YPL+ L +  I+
Sbjct: 3   EMQGILLCSGGGTRMPVLTRHVQKCLLPVVGVPMFLYPLSSLLRTGIT 50


>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical
           protein K12D12.1 protein.
          Length = 1520

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 15  ALVGGVVNSALYNVDEDNSSVTTPRAEFGTRPRAGK 122
           +L+G +VN A   V  +N ++  P  +FGTR + GK
Sbjct: 798 SLMGTIVNLAQDYVGSNNINLLLPIGQFGTRLQGGK 833


>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical
           protein K12D12.1 protein.
          Length = 1520

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 15  ALVGGVVNSALYNVDEDNSSVTTPRAEFGTRPRAGK 122
           +L+G +VN A   V  +N ++  P  +FGTR + GK
Sbjct: 798 SLMGTIVNLAQDYVGSNNINLLLPIGQFGTRLQGGK 833


>U58758-1|AAB93429.2|  819|Caenorhabditis elegans Hypothetical
           protein ZK1127.7 protein.
          Length = 819

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 15  ALVGGVVNSALYNVDEDNSSVTTPRAEFGTRPRAGK 122
           +L+G +VN A   V   N ++  P  +FGTR + GK
Sbjct: 371 SLMGTIVNLAQDYVGSHNINLLLPIGQFGTRLQGGK 406


>U53180-6|AAA96288.1|  202|Caenorhabditis elegans Hypothetical
           protein D1014.4 protein.
          Length = 202

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 22/71 (30%), Positives = 31/71 (43%)
 Frame = +3

Query: 57  DEDNSSVTTPRAEFGTRPRAGKSEFRVVCLNAITMY**TLKKTM*ISLKSDRRLFTVCLL 236
           DEDN      ++    R  +G+S+     L+ I     T KK    S K  R +F VC +
Sbjct: 107 DEDNEYSNELQSVQELRTISGESQMAEQALDYIVSK--TFKKIPVSSQKMSRDIFNVCFV 164

Query: 237 FKNIIFTCSRK 269
           F N  F  S +
Sbjct: 165 FSNNSFIQSTR 175


>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
           protein C52B9.8 protein.
          Length = 1336

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 13  RHWLEVLSILHCIMSTKITAL*PPLVPNSARGLVPENQNLG 135
           R ++ V  +L  I   K+T + PP +P  AR   P  ++LG
Sbjct: 5   RRYISVRKLLALIQEEKLTIIIPPRIPMPAR-YPPTEESLG 44


>AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 1 protein.
          Length = 275

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 6   LGAALVGGVVNSALYNVDEDNSSVTTPR 89
           +G ++ GG+  +ALYNVD    +V   R
Sbjct: 17  VGLSIAGGIAQTALYNVDGGQRAVIFDR 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,685,906
Number of Sequences: 27780
Number of extensions: 279370
Number of successful extensions: 640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)