Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332C09f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 31 0.10
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 29 0.56
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 29 0.56
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 28 0.73
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 28 0.73
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 28 0.97
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces... 28 0.97
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.2
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 27 2.2
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 27 2.2
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 27 2.2
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 27 2.2
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.0
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 26 3.0
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 26 3.9
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac... 26 3.9
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch... 26 3.9
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 25 5.2
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 25 5.2
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 25 5.2
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 5.2
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr... 25 5.2
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 25 6.8
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 25 6.8
SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr... 25 6.8
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 25 6.8
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom... 25 9.0
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 25 9.0
SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|c... 25 9.0
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 25 9.0
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy... 25 9.0
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 31.1 bits (67), Expect = 0.10
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Frame = +2
Query: 50 RLADPNFHGAQKESAWKMSADKPELRALLLEAIAFEDGFE---NNSVKSEPDDEIKSEP- 217
RL + +++ES+ + SA E + E+ + E E +V + D E SE
Sbjct: 29 RLKKQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKKAVAASEDSESDSESS 88
Query: 218 DDEIKSEPEDDYDSADEGEETSGSTALDGMGQYLGEVSSLLDRSG 352
++E ++E E+D + +DE E S S + E S +RSG
Sbjct: 89 EEEEETESEEDSEVSDESESESESESESEEESESEEESDESERSG 133
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 28.7 bits (61), Expect = 0.56
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +2
Query: 89 SAWKMSADKPELRALLLEAIAFEDGFENNSVKSEPDDEIKSEPDDEIKSEPEDDYDSADE 268
S K+ + +L++ + ++ E + +E + E DDE+K D YD +E
Sbjct: 36 SKLKLEDARADLQSSMEDSNKANGNGEETTDGAEGVLQTSEEVDDELKVYNLDTYDDDEE 95
Query: 269 GEETSGSTAL 298
ET G A+
Sbjct: 96 EAETEGPAAM 105
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 28.7 bits (61), Expect = 0.56
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 158 DGFENNSVKSEPDDEIKSEPDDEIKSEPEDDYDSADEGEE 277
D NN K + D+ ++E + + E E+D + +E EE
Sbjct: 86 DNVNNNDKKEDEDNVEENEEEADANEEEEEDEEDDEEDEE 125
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 28.3 bits (60), Expect = 0.73
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +2
Query: 179 VKSEPDDEIKSEPDDEIKSEPEDDYDSADEGEETSGSTALDGMGQYLGEVSSLLDRSGSW 358
V+ + D+E + E DE++ E +++ + +E EE DG G+ G+ D GS
Sbjct: 170 VQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDG---DGDGEGDGDGEGENDGKGSE 226
Query: 359 QE 364
+E
Sbjct: 227 EE 228
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +2
Query: 158 DGFENNSVKSEPDDEIKSEPDDEIKSEPEDDYDSADEGEETSGSTALDGMG 310
D E E ++E E + + + E EDD D EG + G DG G
Sbjct: 175 DEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGEG-DGDGEGENDGKG 224
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 28.3 bits (60), Expect = 0.73
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 152 FEDGFENNSVKSEP-DDEIKSEPDDEIKSEPEDDYDSADEGEE 277
++ +E N K + EI E DD+ E E+D + E EE
Sbjct: 348 YDPDYEENEKKYDAIKHEILGEEDDDENEEDEEDSEETSESEE 390
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Frame = +2
Query: 176 SVKS--EPDDEIKSEPDDEIKSEPEDDYDSADEG 271
S+KS + +DE+K++ + +++ P +YDS +EG
Sbjct: 7 SLKSPLDEEDELKTDHEIDLEKGPLPEYDSEEEG 40
>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 333
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Frame = +2
Query: 176 SVKS--EPDDEIKSEPDDEIKSEPEDDYDSADEG 271
S+KS + +DE+K++ + +++ P +YDS +EG
Sbjct: 7 SLKSPLDEEDELKTDHEIDLEKGPLPEYDSEEEG 40
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 155 EDGFENNSVKSE--PDDEIKSEPDDEIKSEPED 247
EDGFE N ++E +D +KS+ + E PED
Sbjct: 4162 EDGFEENVQENEESTEDGVKSDEELEQGEVPED 4194
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +2
Query: 107 ADKPELRALLLEAIAFED--GFENNSVKSEPDDEIKSEPDDEIKSEPEDDYDSADEGEET 280
AD+ + + LL A+ ED G E D++ ++E + ++ E +++ +S+DE E
Sbjct: 448 ADETQ-QTLLTSALDDEDEEGDEEMEEALSEDEDFQAESESDVAEEYDENAESSDE-EGA 505
Query: 281 SGS 289
SG+
Sbjct: 506 SGA 508
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Frame = +2
Query: 254 DSADEGEETSGSTALDGMGQYLG----EVSSLLDRSGSWQEL 367
D D E G DG+ Y+G EV + ++G WQ L
Sbjct: 384 DIHDAAETVKGKKVADGVEFYVGAASSEVEAAAQKNGDWQTL 425
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +2
Query: 164 FENNSVKSEPDDEIKSEPDDEIKSEPEDDYDSADEGEETSGSTALDGMGQYLGEVSSLL 340
+E +S +S +DE KSE D + DD +E E + + + + SS +
Sbjct: 627 YEYSSEESGSEDEFKSEKDTKGYVISNDDSTQVEEDSEDKSTPNTGASAKLINDPSSTI 685
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 2.2
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = +2
Query: 155 EDGFENNSVKSEPDDEIKSE-PDDEIK-----SEPEDDYDSADEGEETSGSTALDGMGQY 316
E+ E +S ++E DEIKSE + EIK S E + ++ GST+ D +
Sbjct: 199 EEDKEIHSEENETKDEIKSEKKEPEIKKQEGGSSTEKVGQPSSSDDKAKGSTSKDQPSEE 258
Query: 317 LGEVSSLLDR 346
+ S + DR
Sbjct: 259 EEKTSDIQDR 268
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 185 SEPDDEIKSEPDDEIKSEPEDDYDSADEGEE 277
SE E++ DDE++ E +DD D DE E+
Sbjct: 190 SEAQPEVQGN-DDEVEEEDDDD-DDEDEDED 218
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +2
Query: 218 DDEIKSEPEDDYDSADEGEETSGSTALDGMGQYLGEVSSLLDRSGSWQELAGRLRLDSL 394
+DEI E ED Y++A E LD + L E + + LA RL+ D L
Sbjct: 53 EDEIDEENEDTYETAAEKRLRLAREYLDEVKNELVEDGGFDAKEVDRELLASRLKEDVL 111
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.8 bits (54), Expect = 3.9
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = +2
Query: 155 EDGFENNSVKSEPDDEIKS-----EPDDEI-KSEPEDDYDSADEGEE 277
+D NN K DDE S E D+++ + E EDD ++ DEG++
Sbjct: 224 DDDINNNEYK---DDESSSGSESYERDEDVDEEEEEDDDENNDEGDD 267
>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 3.9
Identities = 17/70 (24%), Positives = 27/70 (38%)
Frame = +2
Query: 167 ENNSVKSEPDDEIKSEPDDEIKSEPEDDYDSADEGEETSGSTALDGMGQYLGEVSSLLDR 346
E S+ DD+ + E D+++S +DDY E + + Y D
Sbjct: 162 ETRGFHSKNDDDGRLEERDDLRSSVDDDYYDYPRYSERKSLNSKRHVDNYNENRRRHYDS 221
Query: 347 SGSWQELAGR 376
S+ EL R
Sbjct: 222 YSSYDELERR 231
>SPAC23H4.08 |||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = +2
Query: 110 DKPELRALLLEAIAFEDGFENNSVKSEPDDEIKSEPDDEIKSEPEDD 250
+KP +++A++ D F ++ + + + S+ DD + E ++D
Sbjct: 193 NKPTFAYGVIDALSIPDAFRSSLEQELVSETVDSDKDDPLHDEIDED 239
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 410 AQPSPTHTLLLHLKEYNEISSKSLAFILEDMGELEAA 520
AQP T L + L + ++SL F+ E +GE E A
Sbjct: 585 AQPPSTAELHVDLLSWMTSFTRSLHFVAEFLGETEEA 621
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +2
Query: 140 EAIAFEDGFENNSVKSEPDDEIKSEPD---DEIKSEP 241
EA+ E E+ SV E D+E + E D DE K EP
Sbjct: 199 EAMTEEASDEDESVDLEEDEEEEDEEDEEGDEEKQEP 235
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 25.4 bits (53), Expect = 5.2
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = +2
Query: 80 QKESAWKMSADKPELRALLLEAIAFEDGFENNSVKSEPDDEIKSEPDDEIKSEPEDDYDS 259
+KE A + D + R L E I E+ V E I+ +PD+E+++E +DD S
Sbjct: 29 RKERAKEEEKDPEKKRLRLSENIPAT--IESKRVYDETI--IEDKPDEELQAELKDDEFS 84
Query: 260 ADEGEE 277
A EE
Sbjct: 85 AYFSEE 90
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +2
Query: 119 ELRALLLEAIAFEDGFENNSVKSEPDD----EIKSEPDDEIK 232
E A L + E+G E N K E DD EI + DDE++
Sbjct: 898 EREAFLRSLLENENGEEENDEKGELDDDELNEILARGDDELR 939
>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
3|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +2
Query: 176 SVKS--EPDDEIKSEPDDEIKSEPEDDYDSADE 268
S+KS + +DE+K++ + +++ P +YDS +E
Sbjct: 7 SLKSPLDEEDELKTDHEIDLEKGPLPEYDSEEE 39
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = +2
Query: 191 PDDEIKSEPDDEIKSEPEDDYDSADEGEETSGSTALDGMGQYLGEVSSLLD-RSG-SWQE 364
P D+ + +E+ D D +DE EE S + D + S + D SG W E
Sbjct: 935 PSDDEGDDSVEEVSEYEASDADPSDEEEEESEEYSEDASEEDGYSESEVEDEESGEDWDE 994
Query: 365 LAGRLR 382
L + R
Sbjct: 995 LERKAR 1000
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 170 NNSVKSEPDDEIKSEPDDEIKSEPEDDYDSADEGE 274
N +E +D+I E +DE + E +D++D+ E
Sbjct: 333 NTDSLAEDEDDILEEDEDEDEEELLAIFDASDDSE 367
>SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +2
Query: 221 DEIKSEPEDDYDSADEGEETSGSTA--LDGMGQY--LGEVSSLLDRSGSWQELAGR 376
D +K E+ D DE + STA + G G+ GE+ LL+R+ +W + R
Sbjct: 3 DRLKRRIEE-IDHQDEIIDREASTASPVSGAGKIDQNGEIKDLLERNLTWSQQTSR 57
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 218 DDEIKSEPEDDYDSADEGEE 277
DDE +SE EDD+ DE EE
Sbjct: 82 DDEFRSEDEDDF--MDEEEE 99
>SPBC776.07 |||mitochondrial Mam33 family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 113 KPELRALLLEAIAFEDGFENNSVKSEPDDEIKSEPDDEIKSE 238
KP AL+ EA A +DGF+ ++ D ++ + D +++E
Sbjct: 166 KPGNGALVFEATALDDGFDIENIYFSKDIDMLT--SDSLEAE 205
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 63 LTFTALRKNLPGKCLPINLN 122
+TF L+ N C+P+N+N
Sbjct: 67 ITFIYLQNNGKSSCIPVNIN 86
>SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 326
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = -2
Query: 238 FRLDLVIRFRLDFVIGFRFHTIILEAVFEGDSFQEKCS*FRFIGRHFPGR 89
++ D + L V G + + L+AV EG++ ++ ++G +PGR
Sbjct: 87 YKNDFDNKEHLAIVFGQQIRSDSLDAVQEGETEMDRMVRGAYVGTLYPGR 136
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 24.6 bits (51), Expect = 9.0
Identities = 22/76 (28%), Positives = 32/76 (42%)
Frame = +3
Query: 57 PILTFTALRKNLPGKCLPINLN*EHFSWKLSPSKTASRIIV*NLNPMTKSSLNLMTRSSL 236
P + L N P +L+ S K SPS T S+ ++ +TK S + + R S
Sbjct: 111 PSTSLARLSNNAPRIPKEASLHENSISSKESPSVTTSK----HVATITKPSTSSIARMSS 166
Query: 237 NPRTITIQLMKARRQV 284
N R I K+ V
Sbjct: 167 NARIAAIPRAKSSMAV 182
>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 167 ENNSVKSEPDD-EIKSEPDDEIKSEPEDDYDSADEGE 274
+ +S + E + I+ + +IK P DDY +DE E
Sbjct: 307 KTSSAQGETTEVSIRVDRTFDIKHTPSDDYSISDESE 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,752,113
Number of Sequences: 5004
Number of extensions: 30475
Number of successful extensions: 185
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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