Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332C09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               27   0.15 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 155 EDGFENNSVKSEPDDEIKSEPDDEIKSEPEDDYDSADEGEETSGSTALDGMGQYLGEVSS 334
           +D  +N ++KS+ +    S  DDE    P   +  A     T G  A  G+ +   +V+ 
Sbjct: 90  DDESDNENIKSQKEFPNSSSSDDE---RPNSIHQRASFSLNTDGDIA--GLRKKKHKVNP 144

Query: 335 LLDRS--GSWQ 361
           LL +S  GSW+
Sbjct: 145 LLMQSGMGSWE 155


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 329 SPRPSTGPCR 300
           SPRP  GPC+
Sbjct: 885 SPRPLVGPCK 894


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -1

Query: 344  GPVASSPRPSTGPCRLVPCCHLSPRLHQLNRN 249
            GP AS  RP       VP   LSP      RN
Sbjct: 1356 GPSASGGRPVPERPERVPTVDLSPSPSDRGRN 1387


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 419  SPTHTLLLHLKEYNEISSKSLAF 487
            S + T+L  LK+Y   S + LAF
Sbjct: 1137 SSSETILHGLKKYTNYSMQVLAF 1159


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 380 RLDSLLSLYCAQPSPTHTLLLHLKEYNEISSKSLAF 487
           ++  L +L C + +    L  HL ++ + +S  LAF
Sbjct: 17  KIVELEALLCRRDAEIQELRSHLDKFLQCASLKLAF 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,191
Number of Sequences: 438
Number of extensions: 2025
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)