Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332C08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   0.82 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   1.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   1.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   5.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.7  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 79  H*RTTKS--RKFYITLLILFGENPLWHIQIIHKCNKKIIVL 195
           H R TK   R  ++  L  +G+N +  ++IIH   KK+I L
Sbjct: 221 HLRHTKIWLRPDWLFNLTKYGKNQIKLLEIIHGLTKKVIQL 261


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 399 TTSYFVNSFVSSTLFYIKQKQLLYLYILRKKEN 497
           ++ Y +   +   L+Y   KQL+  Y L +  N
Sbjct: 247 SSQYHMPKEIRGQLYYFLHKQLMTRYFLERMSN 279


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 399 TTSYFVNSFVSSTLFYIKQKQLLYLYILRKKEN 497
           ++ Y +   +   L+Y   KQL+  Y L +  N
Sbjct: 247 SSQYHMPKEIRGQLYYFLHKQLMTRYFLERMSN 279


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 262 YNTNNFLVGSFVEVLYNFFYTNLRQ*FFYYI 170
           YN  N L+    ++  N +Y  LRQ F +++
Sbjct: 214 YNLENKLIYFIEDIGLNTYYFFLRQAFPFWL 244


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 90  YKKSKILHYTSNSIW*KSLMAHSN 161
           Y   K+LH  S+ IW   ++ ++N
Sbjct: 97  YGGVKMLHVPSDHIWRPDIVLYNN 120


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 90  YKKSKILHYTSNSIW*KSLMAHSN 161
           Y   K+LH  S+ IW   ++ ++N
Sbjct: 97  YGGVKMLHVPSDHIWRPDIVLYNN 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,970
Number of Sequences: 438
Number of extensions: 2364
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)