Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332C05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    26   3.9  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    26   3.9  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   5.2  
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    25   6.8  

>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 167 PRRGGSAPRPTPGAPPRSRGALAA 96
           PRR  +AP P   AP RS    AA
Sbjct: 2   PRRRSAAPPPRRAAPARSASTAAA 25


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 188 EKPRHASPRRGGSAPRPTPGAPPRSRGALAAKR 90
           E   H  P+RGG+   P  G P    G+   KR
Sbjct: 221 EDSDHQIPQRGGTLEAPRKGGPRSGVGSRKRKR 253


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 14  HPLGERSSLCRIYLPKIFKRI 76
           H L ++SSL + Y  KI KRI
Sbjct: 239 HELEQKSSLMKYYCKKIMKRI 259


>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 485 LLCKIFVSAKKLLVSLPYSKVTFIKTT 405
           L+C I VSAK + +++P+  + ++  T
Sbjct: 33  LICSIPVSAKNVDLNIPFKNILWVDKT 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,493
Number of Sequences: 5004
Number of extensions: 37521
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)